Dependency Analyzer Report

Report generated02-Jun-2025 12:20:22
Files402
Dependencies2741
FolderMAGE
PathD:\MAGE

Files

FileTypeProblems
addAttachedFiles
Missing file
addIDtoGWASfile.m
Function
addRfont.m
Function
addRfont.m
Function
axescoord2figurecoord.m
Function
axescoord2figurecoord.m
Function
barPlotter.m
Function
barPlotter.m
Function
base64decode.m
Function
base64decode.m
Function
base64encode.m
Function
base64encode.m
Function
base64_encode
Missing file
bcftools.m
Function
bedchunkMex.m
Function
bedchunkMex.m
Function
bedreader.m
Function
bedreader.m
Function
bfilereader.m
Function
bfilereader.m
Function
bFileReaderDep
Missing file
bgenheader.m
Function
bgenheader.m
Function
bgenix.m
Function
bgenix.m
Function
bgenreader.m
Function
bgenreader.m
Function
bgireader.m
Function
bgireader.m
Function
bim2mat.m
Function
bimreader.m
Function
bimreader.m
Function
biomaRt.m
Function
bubbleCorrPlot.m
Function
callVEP.m
Function
callVEP.m
Function
call_geneWrapper.m
Function
call_geneWrapper.m
Function
call_regenie.m
Function
call_regenie.m
Function
CCT.m
Function
changeColnames.m
Function
changeColnames.m
Function
chi2pval.m
Function
chi2pval.m
Function
chisqtest.m
Function
colnames.m
Function
colnames.m
Function
coloc.m
Function
combine_UKB_STRUCTs.m
Function
Contents.m
Script
corrtab.m
Function
createGWASheader.m
Function
createGWASheader.m
Function
createRvec.m
Function
createRvec.m
Function
decodevarname.m
Function
decodevarname.m
Function
defineArgument
Missing file
defineOutput
Missing file
defineqfc.m
Function
defineqfc.mlx
Live Function
delongtest.m
Function
dos2unix.m
Function
dos2unix.m
Function
duplicates.m
Function
duplicates.m
Function
dx_extract_dataset.m
Function
dx_extract_dataset.m
Function
dx_instance.txt
Text DocumentMissing file
effDotPlotter.m
Function
effNetPlotter.m
Function
effPlotter.m
Function
encodevarname.m
Function
encodevarname.m
Function
EnhancedVolcano.m
Function
enrichr.m
Function
enrichr.m
Function
enrichr_dbs.txt
Text DocumentMissing file
EnsemblREST.m
Function
EnsemblREST.m
Function
ensembl_gtf_parser.m
Function
erro
Missing file
fastWriteTable.m
Function
fastWriteTable.m
Function
fast_match_bracket.m
Function
fast_match_bracket.m
Function
fetchHPA.m
Function
fetchHPA.m
Function
fetchReplicationGWAS.m
Function
fig2tile.m
Function
fileparts2.m
Function
fileparts2.m
Function
filterFileRows.m
Function
filterFileRows.m
Function
filterline.m
Function
filterline.m
Function
fitSurvCox.m
Function
fitSurvCox.m
Function
flashpca.m
Function
flashpca.m
Function
forest.m
Function
forest.m
Function
gcorrplot.m
Function
gcta.m
Function
gcta.m
Function
genePlotter.m
Function
genePlotter.m
Function
GeneTestPlotter.m
Function
geneWrapper.m
Function
geneWrapper.m
Function
GENE_IDs.txt
Text DocumentMissing file
genoimpute.m
Function
getAdjustedResponseInner.m
Function
getAdjustedResponseInner.p
P-code
getbulkgeno.m
Function
getbulkgeno.m
Function
getCI.m
Function
getCI.m
Function
getfilenames.m
Function
getfilenames.m
Function
getHESIN_DEATH.m
Function
getHESIN_DEATH.m
Function
getInsampleLD.m
Function
getInsampleLD.m
Function
getMarkerBounds.m
Function
getMarkerBounds.m
Function
getnext
Missing file
getOLINKbatch.m
Function
getOLINKbatch.m
Function
getPheno.m
Function
getPheno.m
Function
getPhenoCov.m
Function
getPhenoCov.m
Function
getPRS.m
Function
getPycmd.m
Function
getPycmd.m
Function
getQCEID.m
Function
getQCEID.m
Function
getRandomName.m
Function
getRandomName.m
Function
getRandomName.m
Function
getrawUKB.m
Function
getrawUKB.m
Function
getRfuncArgs.m
Function
getRfuncArgs.m
Function
getTermInfo
Missing file
getUKBdictionary.m
Function
getUKBdictionary.m
Function
getUKBtrait.m
Function
getUKB_alcohol.m
Function
getWES.m
Function
getWES.m
Function
get_colormap.m
Function
get_colormap.m
Function
ggvenn.m
Function
gNetworkPlot.m
Function
gnomad.m
Function
gnomad.m
Function
gProfiler.m
Function
GSEApy.m
Function
GSEApy.m
Function
gwasCaller.m
Function
gwascatalog.m
Function
gwascatalog.m
Function
gwasrunner.m
Function
gwasrunner.m
Function
gzipdecode.m
Function
gzipencode.m
Function
hasnext
Missing file
Homo_sapiens.GRCh37.87.gtf.gene.mat
MAT-file
hwe.m
Function
identifyVar
Missing file
inStr
Missing file
interactionHelper.m
Function
interactionPlotter.m
Function
interactionPlotter.p
P-code
irnt.m
Function
isoctavemesh.m
Function
isoctavemesh.m
Function
jdatadecode.m
Function
jdatadecode.m
Function
jdataencode.m
Function
jdataencode.m
Function
jload.m
Function
joinFileCols.c
C Source
joinFileCols.m
Function
joinFileCols.m
Function
jsave.m
Function
jsonopt.m
Function
jsonopt.m
Function
KEGGview.m
Function
kfoldLoss
Missing file
kfoldPredict
Missing file
ldclump.m
Function
ldclump.m
Function
ldclumpOnline.m
Function
ldclumpPeaks.m
Function
ldclumpPeaks.m
Function
LDexpress.m
Function
LDexpress.m
Function
LDlink.m
Function
LDlink.m
Function
LDmatrix.m
Function
LDproxy.m
Function
ldsc.m
Function
LDtrait.m
Function
liftover.m
Function
liftover.m
Function
line2arrow.m
Function
line2arrow.m
Function
linewrap
Missing file
loadbj.m
Function
loadbj.m
Function
loadjson.m
Function
loadjson.m
Function
loadmsgpack.m
Function
loadmsgpack.m
Function
loadubjson.m
Function
lrtest.m
Function
lz4decode.m
Function
lz4encode.m
Function
lz4hcdecode.m
Function
lz4hcencode.m
Function
lzipdecode.m
Function
lzipencode.m
Function
lzmadecode.m
Function
lzmaencode.m
Function
makeWSLpath.m
Function
makeWSLpath.m
Function
manplotter.m
Function
mapVariant2gene.m
Function
mapVariant2gene.m
Function
match_bracket.m
Function
match_bracket.m
Function
MATLAB2Rconnector.m
Function
MATLAB2Rconnector.m
Function
MATLAB_biomaRt.r
R FileMissing file
mediate.m
Function
mergeFiles.m
Function
mergeFiles.m
Function
mergeMultipleKeyterms.m
Function
mergeRareSumStat.m
Function
mergeStatFiles.m
Function
mergeStatFiles.m
Function
mergestruct.m
Function
mergestruct.m
Function
metal.m
Function
metal.m
Function
meta_analysis.m
Function
meta_analysis.r
R FileMissing file
mget
Missing file
modifyUKB_STRUCT_ALLtags.m
Function
MRlap.m
Function
MRrunner.m
Function
mtag.m
Function
mtag.m
Function
natsort.m
Function
natsort.m
Function
nestbracket2dim.m
Function
nestbracket2dim.m
Function
N_perc
Missing file
OCTAVE_VERSION
Missing file
olink_batch_number.dat
DAT FileMissing file
olink_proteomics_parser.m
Function
openGWAS.m
Function
opentargets.m
Function
opentargets.m
Function
opentargets_genetics.m
Function
original.pvlas.txt
Text DocumentMissing file
padjust.m
Function
padjust.m
Function
palette.m
Function
palette.m
Function
parseEpirr.m
Function
parsepv.m
Function
parsepv.m
Function
pheatmap.m
Function
pheatmap.m
Function
pheno.m
Class
phenoParser.m
Function
phenoParser.m
Function
phenoscanner.m
Function
plotboxpos.m
Function
plotboxpos.m
Function
plotResiduals
Missing file
polyfun.m
Function
polyfun.m
Function
pops.m
Function
pops.m
Function
processManager.m
Class
processManager.m
Class
processState.m
Class
processState.m
Class
progressGen.m
Function
progressGen.m
Function
protein_coding_genes_grch38.mat
MAT-file
pruneFinemapRes.m
Function
pruneGeneBasedResults.m
Function
pval2chi.m
Function
pval2chi.m
Function
qctool.m
Function
qctool.m
Function
qfc.cpp
C++ Source
qfc.h
C/C++ Header
qfc.mlx
Live Function
qq.m
Function
quickgo.m
Function
R2MAT.ci.txt
Text DocumentMissing file
R2MAT.hetero.txt
Text DocumentMissing file
R2MAT.weights.txt
Text DocumentMissing file
R2MATLABWrapper.m
Function
R2MAT_meta_analysis.txt
Text DocumentMissing file
rarePlotter.m
Function
rarePlotter.m
Function
readGWASfile.m
Function
readGWASfile.m
Function
readRegenieGeneStat.m
Function
readRegenieGeneStat.m
Function
readvcf.m
Function
regenie.m
Function
regenie.m
Function
regionalPlotter.m
Function
removeCovarEffect.m
Function
removeCovarEffect.m
Function
RfncArgs_4matlab.txt
Text DocumentMissing file
RfncContent_4matlab.txt
Text DocumentMissing file
rgb2hex.m
Function
rgb2hex.m
Function
ribocure.m
Function
RoadMap_ENTEX_Finuacane2018_supp7.mat
MAT-file
Rpam.m
Function
runbash.m
Function
runbash.m
Function
runVEP.m
Function
run_bNMF.m
Function
run_bNMF.m
Function
savebj.m
Function
savebj.m
Function
savejson.m
Function
savejson.m
Function
savemsgpack.m
Function
savemsgpack.m
Function
saveubjson.m
Function
SBayesRC.m
Function
SBayesRC.m
Function
scdown.cgi?fmt=txt&id=1
CGI?FMT=TXT&ID=1 FileMissing file
Sex.mat
MAT-file
shade.m
Function
shade.m
Function
smartFloat.m
Function
snptag.m
Function
snptag.m
Function
ss2fuma.m
Function
ss2fuma.m
Function
stratify.m
Function
strshare.m
Function
strshare.m
Function
struct2array.m
Function
struct2array.m
Function
struct2rfun.m
Function
struct2rfun.m
Function
susie.beta.txt
Text DocumentMissing file
susie.m
Function
tabix.m
Function
tabix.m
Function
table2pandasDF.m
Function
table2pandasDF.m
Function
table2Rdf.m
Function
table2Rdf.m
Function
terminate
Missing file
testME.m
Function
testPhenoparser.m
Function
textRepel.m
Function
textRepel.m
Function
thisgene
Missing file
tmp2
Missing file
trainCVmodels.m
Function
truncateStr.m
Function
truncateStr.m
Function
ukb22828_cX_b0_v3.mfi.maf005.info7.mat
MAT-file
UKB2MATfile
Missing file
UKBafb.m
Function
UKBBasketParser.m
Function
UKBBasketParser.m
Function
UKBtraitParser.m
Function
UKB_eid_ukb29150.mat
MAT-file
UKB_HESIN_DEATH_2mat.m
Function
UKB_HESIN_DEATH_2mat.m
Function
UKB_mergeInstance_parser.m
Function
upsetWrapper.m
Function
varargin2struct.m
Function
varargin2struct.m
Function
vcftrimmer.m
Function
vif.m
Function
vif.m
Function
violinPlot.m
Function
zipmat.mexw64
MEX-file
zlibdecode.m
Function
zlibdecode.m
Function
zlibencode.m
Function
zmat
Missing file

Products

Add-Ons

addAttachedFiles

Problems

Impacted Files

FileImpactedRequiredDependency Type
gwasCaller.m
gene_based_tests (Line 641)
addAttachedFiles
Function Call
ribocure.m
gene_based_tests (Line 657)
addAttachedFiles
Function Call

addIDtoGWASfile.m

Path
D:\MAGE\source\addIDtoGWASfile.m
TypeFunction
Last modified06-Aug-2024 17:02:04
Size (bytes)2689

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
addIDtoGWASfile (Line 25)
bfilereader
Function Call
makeWSLpath.m
addIDtoGWASfile (Line 33)
makeWSLpath
Function Call
makeWSLpath.m
addIDtoGWASfile (Line 46)
makeWSLpath
Function Call
runbash.m
addIDtoGWASfile (Line 57)
runbash
Function Call
runbash.m
addIDtoGWASfile (Line 67)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
addIDtoGWASfile
Toolbox

addRfont.m

Path
D:\MAGE\dependencies\Rutils\addRfont.m
TypeFunction
Last modified27-Jun-2024 10:12:25
Size (bytes)979

Required Products

ProductImpactedDependency Type
MATLAB
addRfont
Toolbox

addRfont.m

Path
D:\MATLAB.dependencies\MAGE\Rutils\addRfont.m
TypeFunction
Last modified27-Jun-2024 10:12:25
Size (bytes)979

Impacted Files

FileImpactedRequiredDependency Type
fitSurvCox.m
fitSurvCox (Line 644)
addRfont
Function Call
fitSurvCox.m
fitSurvCox (Line 644)
addRfont
Function Call
gcorrplot.m
gcorrplot (Line 205)
addRfont
Function Call
pheatmap.m
pheatmap (Line 166)
addRfont
Function Call
pheatmap.m
pheatmap (Line 166)
addRfont
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
addRfont
Toolbox

axescoord2figurecoord.m

Path
D:\MAGE\dependencies\line2arrow\axescoord2figurecoord\axescoord2figurecoord.m
TypeFunction
Last modified24-Sep-2021 02:02:30
Size (bytes)3212

Required Products

ProductImpactedDependency Type
MATLAB
axescoord2figurecoord
Toolbox

axescoord2figurecoord.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\line2arrow\axescoord2figurecoord\axescoord2figurecoord.m
TypeFunction
Last modified24-Sep-2021 02:02:30
Size (bytes)3212

Impacted Files

FileImpactedRequiredDependency Type
line2arrow.m
addarrow (Line 144)
axescoord2figurecoord
Function Call
line2arrow.m
addarrow (Line 144)
axescoord2figurecoord
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
axescoord2figurecoord
Toolbox

barPlotter.m

Path
D:\MAGE\source\barPlotter.m
TypeFunction
Last modified11-Apr-2025 18:35:45
Size (bytes)13892

Required Files

FileImpactedRequiredDependency Type
N_perc
drawBarPlot (Line 194)
N_perc
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
barPlotter
Toolbox

barPlotter.m

Path
D:\MATLAB.dependencies\MAGE\barPlotter.m
TypeFunction
Last modified11-Apr-2025 18:35:45
Size (bytes)13892

Impacted Files

FileImpactedRequiredDependency Type
gwasrunner.m
gwasrunner (Line 1464)
barPlotter
Function Call
gwasrunner.m
gwasrunner (Line 1464)
barPlotter
Function Call

Required Files

FileImpactedRequiredDependency Type
N_perc
drawBarPlot (Line 194)
N_perc
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
barPlotter
Toolbox

base64decode.m

Path
D:\MAGE\dependencies\JSONLab\base64decode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1383

Required Files

FileImpactedRequiredDependency Type
isoctavemesh.m
base64decode (Line 36)
isoctavemesh
Function Call
zmat
base64decode (Line 34)
zmat
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
base64decode
Toolbox

base64decode.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\base64decode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1383

Impacted Files

FileImpactedRequiredDependency Type
jdatadecode.m
jdatadecode (Line 135)
base64decode
Function Call
jdatadecode.m
jdatadecode (Line 449)
base64decode
Function Call
jdatadecode.m
jdatadecode (Line 135)
base64decode
Function Call
jdatadecode.m
jdatadecode (Line 449)
base64decode
Function Call
savebj.m
savebj (Line 180)
base64decode
Function Call
savebj.m
savebj (Line 180)
base64decode
Function Call
savejson.m
savejson (Line 174)
base64decode
Function Call
savejson.m
savejson (Line 174)
base64decode
Function Call

Required Files

FileImpactedRequiredDependency Type
isoctavemesh.m
base64decode (Line 36)
isoctavemesh
Function Call
zmat
base64decode (Line 34)
zmat
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
base64decode
Toolbox

base64encode.m

Path
D:\MAGE\dependencies\JSONLab\base64encode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1450

Required Files

FileImpactedRequiredDependency Type
base64_encode
base64encode (Line 47)
base64_encode
Function Call
isoctavemesh.m
base64encode (Line 46)
isoctavemesh
Function Call
zmat
base64encode (Line 36)
zmat
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
base64encode
Toolbox

base64encode.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\base64encode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1450

Impacted Files

FileImpactedRequiredDependency Type
jdataencode.m
mat2jd (Line 323)
base64encode
Function Call
jdataencode.m
any2jd (Line 392)
base64encode
Function Call
jdataencode.m
mat2jd (Line 323)
base64encode
Function Call
jdataencode.m
any2jd (Line 392)
base64encode
Function Call
savejson.m
mat2json (Line 611)
base64encode
Function Call
savejson.m
mat2json (Line 643)
base64encode
Function Call
savejson.m
any2json (Line 761)
base64encode
Function Call
savejson.m
mat2json (Line 611)
base64encode
Function Call
savejson.m
mat2json (Line 643)
base64encode
Function Call
savejson.m
any2json (Line 761)
base64encode
Function Call

Required Files

FileImpactedRequiredDependency Type
base64_encode
base64encode (Line 47)
base64_encode
Function Call
isoctavemesh.m
base64encode (Line 46)
isoctavemesh
Function Call
zmat
base64encode (Line 36)
zmat
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
base64encode
Toolbox

base64_encode

Problems

Impacted Files

FileImpactedRequiredDependency Type
base64encode.m
base64encode (Line 47)
base64_encode
Function Call
base64encode.m
base64encode (Line 47)
base64_encode
Function Call

bcftools.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\bcftools\bcftools.m
TypeFunction
Last modified09-Mar-2024 10:37:11
Size (bytes)425

Impacted Files

FileImpactedRequiredDependency Type
bcftools.m
bcftools (Line 5)
bcftools
Function Argument
readvcf.m
readvcf (Line 46)
bcftools
Function Call
readvcf.m
readvcf (Line 59)
bcftools
Function Call
readvcf.m
readvcf (Line 63)
bcftools
Function Call

Required Files

FileImpactedRequiredDependency Type
bcftools.m
bcftools (Line 5)
bcftools
Function Argument
getfilenames.m
bcftools (Line 9)
getfilenames
Function Call
makeWSLpath.m
bcftools (Line 15)
makeWSLpath
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
bcftools
Toolbox

bedchunkMex.m

Path
D:\MAGE\source\bedchunkMex.m
TypeFunction
Last modified20-Aug-2021 16:09:27
Size (bytes)1533

Required Products

ProductImpactedDependency Type
MATLAB
bedchunkMex
Toolbox
Parallel Computing Toolbox
bedchunkMex (Line 8)
Toolbox

bedchunkMex.m

Path
D:\MATLAB.dependencies\MAGE\bedchunkMex.m
TypeFunction
Last modified20-Aug-2021 16:09:27
Size (bytes)1533

Impacted Files

FileImpactedRequiredDependency Type
bedreader.m
bedreader (Line 104)
bedchunkMex
Function Call
bedreader.m
bedreader (Line 124)
bedchunkMex
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
bedchunkMex
Toolbox
Parallel Computing Toolbox
bedchunkMex (Line 8)
Toolbox

bedreader.m

Path
D:\MAGE\source\bedreader.m
TypeFunction
Last modified30-May-2025 17:11:57
Size (bytes)4195

Required Files

FileImpactedRequiredDependency Type
bedchunkMex.m
bedreader (Line 104)
bedchunkMex
Function Call
bimreader.m
bedreader (Line 60)
bimreader
Function Call

Required Products

ProductImpactedDependency Type
Communications Toolbox
bedreader (Line 53)
Function Call
MATLAB
bedreader
Toolbox

bedreader.m

Path
D:\MATLAB.dependencies\MAGE\bedreader.m
TypeFunction
Last modified27-Apr-2022 11:12:53
Size (bytes)4607

Impacted Files

FileImpactedRequiredDependency Type
getWES.m
getWESsingle (Line 638)
bedreader
Function Call
getWES.m
getWESsingle (Line 640)
bedreader
Function Call
getWES.m
getWESsingle (Line 679)
bedreader
Function Call
getWES.m
getWESsingle (Line 681)
bedreader
Function Call

Required Files

FileImpactedRequiredDependency Type
bedchunkMex.m
bedreader (Line 124)
bedchunkMex
Function Call
bimreader.m
bedreader (Line 80)
bimreader
Function Call

Required Products

ProductImpactedDependency Type
Communications Toolbox
bedreader (Line 73)
Function Call
MATLAB
bedreader
Toolbox

bfilereader.m

Path
D:\MAGE\dependencies\bFileReader\bfilereader.m
TypeFunction
Last modified11-Apr-2025 18:20:01
Size (bytes)26276

Required Files

FileImpactedRequiredDependency Type
bFileReaderDep
bfilereader (Line 239)
bFileReaderDep
Function Call
bfilereader.m
bfilereader (Line 211)
bfilereader
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
bfilereader
Toolbox

bfilereader.m

Path
D:\MATLAB.dependencies\MAGE\bFileReader\bfilereader.m
TypeFunction
Last modified11-Apr-2025 18:20:01
Size (bytes)26276

Impacted Files

FileImpactedRequiredDependency Type
MRlap.m
MRlap (Line 61)
bfilereader
Function Call
MRlap.m
MRlap (Line 62)
bfilereader
Function Call
addIDtoGWASfile.m
addIDtoGWASfile (Line 25)
bfilereader
Function Call
bfilereader.m
bfilereader (Line 211)
bfilereader
Function Argument
bfilereader.m
bfilereader (Line 211)
bfilereader
Function Argument
bimreader.m
bimreader (Line 60)
bfilereader
Function Call
bimreader.m
bimreader (Line 60)
bfilereader
Function Call
callVEP.m
getdbNSFP (Line 791)
bfilereader
Function Call
callVEP.m
getdbNSFP (Line 795)
bfilereader
Function Call
callVEP.m
getdbNSFP (Line 791)
bfilereader
Function Call
callVEP.m
getdbNSFP (Line 795)
bfilereader
Function Call
call_regenie.m
call_regenie (Line 601)
bfilereader
Function Call
call_regenie.m
call_regenie (Line 609)
bfilereader
Function Call
changeColnames.m
changeColnames (Line 29)
bfilereader
Function Call
changeColnames.m
changeColnames (Line 29)
bfilereader
Function Call
coloc.m
fetchEgeneFiles (Line 1110)
bfilereader
Function Call
coloc.m
getLDmat (Line 941)
bfilereader
Function Call
fetchReplicationGWAS.m
fetchReplicationGWAS (Line 55)
bfilereader
Function Call
fetchReplicationGWAS.m
fetchReplicationGWAS (Line 67)
bfilereader
Function Call
fetchReplicationGWAS.m
fetchReplicationGWAS (Line 82)
bfilereader
Function Call
fetchReplicationGWAS.m
fetchReplicationGWAS (Line 95)
bfilereader
Function Call
filterFileRows.m
filterFileRows (Line 35)
bfilereader
Function Call
filterFileRows.m
filterFileRows (Line 35)
bfilereader
Function Call
geneWrapper.m
parseWESqc (Line 1010)
bfilereader
Function Call
geneWrapper.m
parseWESqc (Line 1049)
bfilereader
Function Call
geneWrapper.m
parseWESqc (Line 1056)
bfilereader
Function Call
geneWrapper.m
parseWESqc (Line 1071)
bfilereader
Function Call
geneWrapper.m
parseWESqc (Line 1093)
bfilereader
Function Call
geneWrapper.m
parseWESqc (Line 1103)
bfilereader
Function Call
geneWrapper.m
innerWrapperSingle (Line 317)
bfilereader
Function Call
geneWrapper.m
innerWrapperSingle (Line 372)
bfilereader
Function Call
geneWrapper.m
parseWESqc (Line 1010)
bfilereader
Function Call
geneWrapper.m
parseWESqc (Line 1049)
bfilereader
Function Call
geneWrapper.m
parseWESqc (Line 1056)
bfilereader
Function Call
geneWrapper.m
parseWESqc (Line 1077)
bfilereader
Function Call
geneWrapper.m
parseWESqc (Line 1102)
bfilereader
Function Call
geneWrapper.m
parseWESqc (Line 1115)
bfilereader
Function Call
geneWrapper.m
innerWrapperSingle (Line 317)
bfilereader
Function Call
geneWrapper.m
innerWrapperSingle (Line 372)
bfilereader
Function Call
getWES.m
getWESsingle (Line 286)
bfilereader
Function Call
getWES.m
getWESsingle (Line 329)
bfilereader
Function Call
getWES.m
readAnnoSetFiles (Line 795)
bfilereader
Function Call
getWES.m
readAnnoSetFiles (Line 848)
bfilereader
Function Call
getWES.m
getWESsingle (Line 323)
bfilereader
Function Call
getWES.m
getWESsingle (Line 368)
bfilereader
Function Call
getWES.m
readAnnoSetFiles (Line 836)
bfilereader
Function Call
getWES.m
readAnnoSetFiles (Line 889)
bfilereader
Function Call
gwasCaller.m
gene_based_tests (Line 637)
bfilereader
Function Argument
gwasrunner.m
call_regenie_in (Line 2468)
bfilereader
Function Call
gwasrunner.m
call_regenie_in (Line 2468)
bfilereader
Function Call
joinFileCols.m
joinFileCols (Line 36)
bfilereader
Function Call
joinFileCols.m
joinFileCols (Line 36)
bfilereader
Function Call
ldsc.m
munge_sumstats (Line 264)
bfilereader
Function Call
mergeFiles.m
mergeFiles (Line 27)
bfilereader
Function Call
mergeFiles.m
mergeFiles (Line 27)
bfilereader
Function Call
mtag.m
munge_sumstats (Line 143)
bfilereader
Function Call
mtag.m
munge_sumstats (Line 143)
bfilereader
Function Call
olink_proteomics_parser.m
olink_proteomics_parser (Line 17)
bfilereader
Function Call
polyfun.m
polyfun (Line 112)
bfilereader
Function Call
polyfun.m
finemapper (Line 452)
bfilereader
Function Call
polyfun.m
polyfun (Line 112)
bfilereader
Function Call
polyfun.m
finemapper (Line 452)
bfilereader
Function Call
readGWASfile.m
readGWASfile (Line 271)
bfilereader
Function Call
readGWASfile.m
readGWASfile (Line 271)
bfilereader
Function Call
ribocure.m
gene_based_tests (Line 653)
bfilereader
Function Argument
ss2fuma.m
ss2fuma (Line 44)
bfilereader
Function Call
ss2fuma.m
ss2fuma (Line 44)
bfilereader
Function Call
tabix.m
tabix (Line 142)
bfilereader
Function Call
tabix.m
tabix (Line 73)
bfilereader
Function Call
tabix.m
tabix (Line 154)
bfilereader
Function Call
tabix.m
tabix (Line 85)
bfilereader
Function Call

Required Files

FileImpactedRequiredDependency Type
bFileReaderDep
bfilereader (Line 239)
bFileReaderDep
Function Call
bfilereader.m
bfilereader (Line 211)
bfilereader
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
bfilereader
Toolbox

bFileReaderDep

Problems

Impacted Files

FileImpactedRequiredDependency Type
bfilereader.m
bfilereader (Line 239)
bFileReaderDep
Function Call
bfilereader.m
bfilereader (Line 239)
bFileReaderDep
Function Call

bgenheader.m

Path
D:\MAGE\source\bgenheader.m
TypeFunction
Last modified09-Aug-2024 19:32:20
Size (bytes)3429

Required Products

ProductImpactedDependency Type
Communications Toolbox
bgenheader (Line 40)
Function Call
Communications Toolbox
bgenheader (Line 41)
Function Call
Communications Toolbox
bgenheader (Line 43)
Function Call
Communications Toolbox
bgenheader (Line 62)
Function Call
Communications Toolbox
bgenheader (Line 68)
Function Call
MATLAB
bgenheader
Toolbox

bgenheader.m

Path
D:\MATLAB.dependencies\MAGE\bgenheader.m
TypeFunction
Last modified09-Aug-2024 19:32:20
Size (bytes)3429

Impacted Files

FileImpactedRequiredDependency Type
bgenreader.m
bgenreader (Line 92)
bgenheader
Function Call
bgenreader.m
bgenreader (Line 92)
bgenheader
Function Call
getbulkgeno.m
getbulkgeno (Line 145)
bgenheader
Function Call
getbulkgeno.m
getbulkgeno (Line 145)
bgenheader
Function Call

Required Products

ProductImpactedDependency Type
Communications Toolbox
bgenheader (Line 40)
Function Call
Communications Toolbox
bgenheader (Line 41)
Function Call
Communications Toolbox
bgenheader (Line 43)
Function Call
Communications Toolbox
bgenheader (Line 62)
Function Call
Communications Toolbox
bgenheader (Line 68)
Function Call
MATLAB
bgenheader
Toolbox

bgenix.m

Path
D:\MAGE\dependencies\bgen\bgenix.m
TypeFunction
Last modified19-Oct-2024 16:10:51
Size (bytes)1460

Required Files

FileImpactedRequiredDependency Type
bgenix.m
bgenix (Line 18)
bgenix
Function Argument
makeWSLpath.m
bgenix (Line 24)
makeWSLpath
Function Call
makeWSLpath.m
bgenix (Line 35)
makeWSLpath
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
bgenix
Toolbox

bgenix.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\bgen\bgenix.m
TypeFunction
Last modified19-Oct-2024 16:10:51
Size (bytes)1460

Impacted Files

FileImpactedRequiredDependency Type
bgenix.m
bgenix (Line 18)
bgenix
Function Argument
bgenix.m
bgenix (Line 18)
bgenix
Function Argument

Required Files

FileImpactedRequiredDependency Type
bgenix.m
bgenix (Line 18)
bgenix
Function Argument
makeWSLpath.m
bgenix (Line 24)
makeWSLpath
Function Call
makeWSLpath.m
bgenix (Line 35)
makeWSLpath
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
bgenix
Toolbox

bgenreader.m

Path
D:\MAGE\source\bgenreader.m
TypeFunction
Last modified30-May-2025 17:13:59
Size (bytes)21223

Required Files

FileImpactedRequiredDependency Type
bgenheader.m
bgenreader (Line 92)
bgenheader
Function Call
zipmat.mexw64
innerzlibdecomp (Line 606)
zipmat
Function Call

Required Products

ProductImpactedDependency Type
Communications Toolbox
decompressCalls (Line 388)
Function Call
Database Toolbox
bgenreader (Line 119)
Function Call
MATLAB
bgenreader
Toolbox
Parallel Computing Toolbox
bgenreader (Line 216)
Toolbox
Parallel Computing Toolbox
bgenreader (Line 80)
Function Call
Parallel Computing Toolbox
bgenreader (Line 81)
Function Call
Parallel Computing Toolbox
bgenreader (Line 82)
Function Call
Parallel Computing Toolbox
bgenreader (Line 89)
Function Call

bgenreader.m

Path
D:\MATLAB.dependencies\MAGE\bgenreader.m
TypeFunction
Last modified09-Aug-2024 19:55:47
Size (bytes)30583

Impacted Files

FileImpactedRequiredDependency Type
getbulkgeno.m
getgeno (Line 401)
bgenreader
Function Call
getbulkgeno.m
getgeno (Line 406)
bgenreader
Function Call
getbulkgeno.m
getgeno (Line 401)
bgenreader
Function Call
getbulkgeno.m
getgeno (Line 406)
bgenreader
Function Call

Required Files

FileImpactedRequiredDependency Type
bgenheader.m
bgenreader (Line 92)
bgenheader
Function Call
zipmat.mexw64
innerzlibdecomp (Line 657)
zipmat
Function Call

Required Products

ProductImpactedDependency Type
Communications Toolbox
decompressCalls (Line 388)
Function Call
Database Toolbox
bgenreader (Line 119)
Function Call
MATLAB
bgenreader
Toolbox
Parallel Computing Toolbox
bgenreader (Line 216)
Toolbox
Parallel Computing Toolbox
bgenreader (Line 80)
Function Call
Parallel Computing Toolbox
bgenreader (Line 81)
Function Call
Parallel Computing Toolbox
bgenreader (Line 82)
Function Call
Parallel Computing Toolbox
bgenreader (Line 89)
Function Call

bgireader.m

Path
D:\MAGE\source\bgireader.m
TypeFunction
Last modified30-May-2025 17:14:22
Size (bytes)4132

Required Files

FileImpactedRequiredDependency Type
getbulkgeno.m
bgireader (Line 18)
getbulkgeno
Function Call

Required Products

ProductImpactedDependency Type
Database Toolbox
bgiloader (Line 65)
Function Call
MATLAB
bgireader
Toolbox
Parallel Computing Toolbox
bgireader (Line 40)
Toolbox

bgireader.m

Path
D:\MATLAB.dependencies\MAGE\bgireader.m
TypeFunction
Last modified05-Sep-2024 13:59:11
Size (bytes)4432

Impacted Files

FileImpactedRequiredDependency Type
MRlap.m
MRlap (Line 119)
bgireader
Function Call
fetchReplicationGWAS.m
fetchReplicationGWAS (Line 16)
bgireader
Function Call
gwasrunner.m
gwasrunner (Line 698)
bgireader
Function Call
gwasrunner.m
gwasrunner (Line 698)
bgireader
Function Call
mapVariant2gene.m
mapVariant2gene (Line 54)
bgireader
Function Call
mapVariant2gene.m
mapVariant2gene (Line 54)
bgireader
Function Call
polyfun.m
fetchLDmat (Line 507)
bgireader
Function Call
polyfun.m
fetchLDmat (Line 507)
bgireader
Function Call

Required Files

FileImpactedRequiredDependency Type
getbulkgeno.m
bgireader (Line 18)
getbulkgeno
Function Call

Required Products

ProductImpactedDependency Type
Database Toolbox
bgiloader (Line 65)
Function Call
MATLAB
bgireader
Toolbox
Parallel Computing Toolbox
bgireader (Line 40)
Toolbox

bim2mat.m

Path
D:\MAGE\source\bim2mat.m
TypeFunction
Last modified27-Oct-2020 13:02:34
Size (bytes)869

Required Products

ProductImpactedDependency Type
MATLAB
bim2mat
Toolbox

bimreader.m

Path
D:\MAGE\source\bimreader.m
TypeFunction
Last modified19-May-2025 14:22:25
Size (bytes)2661

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
bimreader (Line 60)
bfilereader
Function Call
filterFileRows.m
bimreader (Line 26)
filterFileRows
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
bimreader
Toolbox
Parallel Computing Toolbox
bimreader (Line 50)
Function Call

bimreader.m

Path
D:\MATLAB.dependencies\MAGE\bimreader.m
TypeFunction
Last modified19-May-2025 14:22:25
Size (bytes)2661

Impacted Files

FileImpactedRequiredDependency Type
bedreader.m
bedreader (Line 60)
bimreader
Function Call
bedreader.m
bedreader (Line 80)
bimreader
Function Call
getWES.m
getWESsingle (Line 582)
bimreader
Function Call
getWES.m
getWESsingle (Line 609)
bimreader
Function Call
getWES.m
getWESsingle (Line 648)
bimreader
Function Call
getWES.m
getWESsingle (Line 623)
bimreader
Function Call
getWES.m
getWESsingle (Line 650)
bimreader
Function Call
getWES.m
getWESsingle (Line 689)
bimreader
Function Call
ldclump.m
snptag (Line 293)
bimreader
Function Call
ldclump.m
snptag (Line 293)
bimreader
Function Call

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
bimreader (Line 60)
bfilereader
Function Call
filterFileRows.m
bimreader (Line 26)
filterFileRows
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
bimreader
Toolbox
Parallel Computing Toolbox
bimreader (Line 50)
Function Call

biomaRt.m

Path
D:\MAGE\dependencies\Rwrappers\biomaRt.m
TypeFunction
Last modified06-Aug-2021 11:03:43
Size (bytes)1502

Required Files

FileImpactedRequiredDependency Type
GENE_IDs.txt
biomaRt (Line 41)
GENE_IDs
Function Argument
MATLAB2Rconnector.m
biomaRt (Line 38)
MATLAB2Rconnector
Function Call
MATLAB_biomaRt.r
biomaRt (Line 35)
MATLAB_biomaRt
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
biomaRt
Toolbox

bubbleCorrPlot.m

Path
D:\MAGE\source\bubbleCorrPlot.m
TypeFunction
Last modified13-Feb-2023 12:16:14
Size (bytes)1012

Required Products

ProductImpactedDependency Type
MATLAB
bubbleCorrPlot
Toolbox

callVEP.m

Path
D:\MAGE\source\callVEP.m
TypeFunction
Last modified30-May-2025 17:15:59
Size (bytes)33549

Required Files

FileImpactedRequiredDependency Type
EnsemblREST.m
getrawVEP (Line 114)
EnsemblREST
Function Call
bfilereader.m
getdbNSFP (Line 791)
bfilereader
Function Call
bfilereader.m
getdbNSFP (Line 795)
bfilereader
Function Call
callVEP.m
getVEP (Line 415)
callVEP
Function Argument
getfilenames.m
getdbNSFP (Line 709)
getfilenames
Function Call
natsort.m
getdbNSFP (Line 719)
natsort
Function Call
strshare.m
getdbNSFP (Line 724)
strshare
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
callVEP
Toolbox

callVEP.m

Path
D:\MATLAB.dependencies\MAGE\callVEP.m
TypeFunction
Last modified08-Apr-2025 16:36:39
Size (bytes)33563

Impacted Files

FileImpactedRequiredDependency Type
callVEP.m
getVEP (Line 415)
callVEP
Function Argument
callVEP.m
getVEP (Line 415)
callVEP
Function Argument
geneWrapper.m
innerWrapperSingle (Line 353)
callVEP
Function Call
geneWrapper.m
parseAnnotatedCategories (Line 845)
callVEP
Function Call
geneWrapper.m
parseAnnotatedCategories (Line 943)
callVEP
Function Call
geneWrapper.m
innerWrapperSingle (Line 353)
callVEP
Function Call
geneWrapper.m
parseAnnotatedCategories (Line 845)
callVEP
Function Call
geneWrapper.m
parseAnnotatedCategories (Line 943)
callVEP
Function Call
gwasrunner.m
gwasrunner (Line 601)
callVEP
Function Call
gwasrunner.m
gwasrunner (Line 601)
callVEP
Function Call
mapVariant2gene.m
mapVariant2gene (Line 71)
callVEP
Function Call
mapVariant2gene.m
mapVariant2gene (Line 71)
callVEP
Function Call

Required Files

FileImpactedRequiredDependency Type
EnsemblREST.m
getrawVEP (Line 114)
EnsemblREST
Function Call
bfilereader.m
getdbNSFP (Line 791)
bfilereader
Function Call
bfilereader.m
getdbNSFP (Line 795)
bfilereader
Function Call
callVEP.m
getVEP (Line 415)
callVEP
Function Argument
getfilenames.m
getdbNSFP (Line 709)
getfilenames
Function Call
natsort.m
getdbNSFP (Line 719)
natsort
Function Call
strshare.m
getdbNSFP (Line 724)
strshare
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
callVEP
Toolbox

call_geneWrapper.m

Path
D:\MAGE\dependencies\REGENIE\call_geneWrapper.m
TypeFunction
Last modified07-Apr-2025 12:24:42
Size (bytes)2243

Required Files

FileImpactedRequiredDependency Type
call_geneWrapper.m
call_geneWrapper (Line 22)
call_geneWrapper
Function Argument
geneWrapper.m
call_geneWrapper (Line 47)
geneWrapper
Function Call
getfilenames.m
call_geneWrapper (Line 25)
getfilenames
Function Call
protein_coding_genes_grch38.mat
call_geneWrapper (Line 24)
protein_coding_genes_grch38
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
call_geneWrapper
Toolbox

call_geneWrapper.m

Path
D:\MATLAB.dependencies\MAGE\REGENIE\step2.GENE\call_geneWrapper.m
TypeFunction
Last modified07-Apr-2025 12:24:42
Size (bytes)2243

Impacted Files

FileImpactedRequiredDependency Type
call_geneWrapper.m
call_geneWrapper (Line 22)
call_geneWrapper
Function Argument
call_geneWrapper.m
call_geneWrapper (Line 22)
call_geneWrapper
Function Argument

Required Files

FileImpactedRequiredDependency Type
call_geneWrapper.m
call_geneWrapper (Line 22)
call_geneWrapper
Function Argument
geneWrapper.m
call_geneWrapper (Line 47)
geneWrapper
Function Call
getfilenames.m
call_geneWrapper (Line 25)
getfilenames
Function Call
protein_coding_genes_grch38.mat
call_geneWrapper (Line 24)
protein_coding_genes_grch38
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
call_geneWrapper
Toolbox

call_regenie.m

Path
D:\MAGE\dependencies\REGENIE\call_regenie.m
TypeFunction
Last modified30-May-2025 16:02:04
Size (bytes)35592

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
call_regenie (Line 601)
bfilereader
Function Call
colnames.m
call_regenie (Line 260)
colnames
Function Call
duplicates.m
call_regenie (Line 426)
duplicates
Function Call
getPhenoCov.m
call_regenie (Line 241)
getPhenoCov
Function Call
getfilenames.m
call_regenie (Line 143)
getfilenames
Function Call
getfilenames.m
call_regenie (Line 179)
getfilenames
Function Call
getfilenames.m
call_regenie (Line 182)
getfilenames
Function Call
getfilenames.m
call_regenie (Line 191)
getfilenames
Function Call
getfilenames.m
call_regenie (Line 194)
getfilenames
Function Call
getfilenames.m
call_regenie (Line 534)
getfilenames
Function Call
getfilenames.m
call_regenie (Line 535)
getfilenames
Function Call
getfilenames.m
call_regenie (Line 557)
getfilenames
Function Call
getfilenames.m
call_regenie (Line 573)
getfilenames
Function Call
makeWSLpath.m
call_regenie (Line 486)
makeWSLpath
Function Call
mergeStatFiles.m
call_regenie (Line 540)
mergeStatFiles
Function Call
mergeStatFiles.m
call_regenie (Line 569)
mergeStatFiles
Function Call
mergeStatFiles.m
call_regenie (Line 578)
mergeStatFiles
Function Call
mergeStatFiles.m
call_regenie (Line 586)
mergeStatFiles
Function Call
readRegenieGeneStat.m
call_regenie (Line 594)
readRegenieGeneStat
Function Call
regenie.m
call_regenie (Line 409)
regenie
Function Call
regenie.m
call_regenie (Line 412)
regenie
Function Call
regenie.m
getREGENIEcmd (Line 789)
regenie
Function Call
regenie.m
getREGENIEcmd (Line 794)
regenie
Function Call
runbash.m
call_regenie (Line 510)
runbash
Function Call
runbash.m
call_regenie (Line 517)
runbash
Function Call
strshare.m
subsetGenoFiles (Line 701)
strshare
Function Call
strshare.m
subsetGenoFiles (Line 716)
strshare
Function Call
strshare.m
subsetGenoFiles (Line 720)
strshare
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
call_regenie
Toolbox
Parallel Computing Toolbox
call_regenie (Line 603)
Function Call

call_regenie.m

Path
D:\MATLAB.dependencies\MAGE\REGENIE\call_regenie.m
TypeFunction
Last modified31-May-2025 12:41:17
Size (bytes)36132

Impacted Files

FileImpactedRequiredDependency Type
gwasrunner.m
call_regenie_in (Line 2691)
call_regenie
Function Call
gwasrunner.m
call_regenie_in (Line 2691)
call_regenie
Function Call

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
call_regenie (Line 609)
bfilereader
Function Call
colnames.m
call_regenie (Line 260)
colnames
Function Call
duplicates.m
call_regenie (Line 426)
duplicates
Function Call
getPhenoCov.m
call_regenie (Line 241)
getPhenoCov
Function Call
getfilenames.m
call_regenie (Line 143)
getfilenames
Function Call
getfilenames.m
call_regenie (Line 179)
getfilenames
Function Call
getfilenames.m
call_regenie (Line 182)
getfilenames
Function Call
getfilenames.m
call_regenie (Line 191)
getfilenames
Function Call
getfilenames.m
call_regenie (Line 194)
getfilenames
Function Call
getfilenames.m
call_regenie (Line 542)
getfilenames
Function Call
getfilenames.m
call_regenie (Line 543)
getfilenames
Function Call
getfilenames.m
call_regenie (Line 565)
getfilenames
Function Call
getfilenames.m
call_regenie (Line 581)
getfilenames
Function Call
makeWSLpath.m
call_regenie (Line 486)
makeWSLpath
Function Call
mergeStatFiles.m
call_regenie (Line 548)
mergeStatFiles
Function Call
mergeStatFiles.m
call_regenie (Line 577)
mergeStatFiles
Function Call
mergeStatFiles.m
call_regenie (Line 586)
mergeStatFiles
Function Call
mergeStatFiles.m
call_regenie (Line 594)
mergeStatFiles
Function Call
readRegenieGeneStat.m
call_regenie (Line 602)
readRegenieGeneStat
Function Call
regenie.m
call_regenie (Line 409)
regenie
Function Call
regenie.m
call_regenie (Line 412)
regenie
Function Call
regenie.m
getREGENIEcmd (Line 797)
regenie
Function Call
regenie.m
getREGENIEcmd (Line 802)
regenie
Function Call
runbash.m
call_regenie (Line 510)
runbash
Function Call
runbash.m
call_regenie (Line 525)
runbash
Function Call
strshare.m
subsetGenoFiles (Line 709)
strshare
Function Call
strshare.m
subsetGenoFiles (Line 724)
strshare
Function Call
strshare.m
subsetGenoFiles (Line 728)
strshare
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
call_regenie
Toolbox
Parallel Computing Toolbox
call_regenie (Line 611)
Function Call

CCT.m

Path
D:\MAGE\source\CCT.m
TypeFunction
Last modified04-Apr-2025 10:47:40
Size (bytes)3560

Required Products

ProductImpactedDependency Type
MATLAB
CCT
Toolbox

changeColnames.m

Path
D:\MAGE\source\changeColnames.m
TypeFunction
Last modified19-Nov-2024 10:53:14
Size (bytes)3034

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
changeColnames (Line 29)
bfilereader
Function Call
makeWSLpath.m
changeColnames (Line 42)
makeWSLpath
Function Call
makeWSLpath.m
changeColnames (Line 68)
makeWSLpath
Function Call
makeWSLpath.m
changeColnames (Line 85)
makeWSLpath
Function Call
runbash.m
changeColnames (Line 80)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
changeColnames
Toolbox

changeColnames.m

Path
D:\MATLAB.dependencies\MAGE\changeColnames.m
TypeFunction
Last modified19-Nov-2024 10:53:14
Size (bytes)3034

Impacted Files

FileImpactedRequiredDependency Type
MRlap.m
MRlap (Line 72)
changeColnames
Function Call
MRlap.m
MRlap (Line 76)
changeColnames
Function Call

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
changeColnames (Line 29)
bfilereader
Function Call
makeWSLpath.m
changeColnames (Line 42)
makeWSLpath
Function Call
makeWSLpath.m
changeColnames (Line 68)
makeWSLpath
Function Call
makeWSLpath.m
changeColnames (Line 85)
makeWSLpath
Function Call
runbash.m
changeColnames (Line 80)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
changeColnames
Toolbox

chi2pval.m

Path
D:\MAGE\source\chi2pval.m
TypeFunction
Last modified06-Aug-2020 12:54:56
Size (bytes)337

Required Products

ProductImpactedDependency Type
MATLAB
chi2pval
Toolbox

chi2pval.m

Path
D:\MATLAB.dependencies\MAGE\chi2pval.m
TypeFunction
Last modified06-Aug-2020 12:54:56
Size (bytes)337

Impacted Files

FileImpactedRequiredDependency Type
chisqtest.m
chisqtest (Line 14)
chi2pval
Function Call
effPlotter.m
effPlotter (Line 372)
chi2pval
Function Call
gwasrunner.m
scoretest (Line 2087)
chi2pval
Function Call
gwasrunner.m
scoretest (Line 2112)
chi2pval
Function Call
gwasrunner.m
scoretest (Line 2130)
chi2pval
Function Call
gwasrunner.m
scoretest (Line 2087)
chi2pval
Function Call
gwasrunner.m
scoretest (Line 2112)
chi2pval
Function Call
gwasrunner.m
scoretest (Line 2130)
chi2pval
Function Call
hwe.m
hwe (Line 25)
chi2pval
Function Call
lrtest.m
lrtest (Line 15)
chi2pval
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
chi2pval
Toolbox

chisqtest.m

Path
D:\MAGE\source\chisqtest.m
TypeFunction
Last modified08-Sep-2020 09:49:17
Size (bytes)363

Required Files

FileImpactedRequiredDependency Type
chi2pval.m
chisqtest (Line 14)
chi2pval
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
chisqtest
Toolbox

colnames.m

Path
D:\MAGE\source\colnames.m
TypeFunction
Last modified18-May-2023 14:56:49
Size (bytes)827

Required Products

ProductImpactedDependency Type
MATLAB
colnames
Toolbox

colnames.m

Path
D:\MATLAB.dependencies\MAGE\colnames.m
TypeFunction
Last modified18-May-2023 14:56:49
Size (bytes)827

Impacted Files

FileImpactedRequiredDependency Type
EnsemblREST.m
aggregateCells (Line 561)
colnames
Function Call
EnsemblREST.m
aggregateCells (Line 561)
colnames
Function Call
GSEApy.m
writeGSEAtable (Line 220)
colnames
Function Call
GSEApy.m
writeGSEAtable (Line 220)
colnames
Function Call
GeneTestPlotter.m
drawPerPheno (Line 121)
colnames
Function Call
GeneTestPlotter.m
drawPerPheno (Line 77)
colnames
Function Call
MRlap.m
MRlap (Line 208)
colnames
Function Call
MRlap.m
MRlap (Line 211)
colnames
Function Call
MRlap.m
MRlap (Line 213)
colnames
Function Call
MRlap.m
MRlap (Line 215)
colnames
Function Call
MRlap.m
MRlap (Line 218)
colnames
Function Call
MRlap.m
MRlap (Line 83)
colnames
Function Call
MRrunner.m
MRrunner (Line 106)
colnames
Function Call
MRrunner.m
MRrunner (Line 125)
colnames
Function Call
MRrunner.m
MRrunner (Line 173)
colnames
Function Call
MRrunner.m
MRrunner (Line 189)
colnames
Function Call
Rpam.m
Rpam (Line 95)
colnames
Function Call
UKBBasketParser.m
UKBBasketParser (Line 167)
colnames
Function Call
UKBBasketParser.m
UKBBasketParser (Line 167)
colnames
Function Call
UKBafb.m
UKBafb (Line 40)
colnames
Function Call
call_regenie.m
call_regenie (Line 260)
colnames
Function Call
call_regenie.m
call_regenie (Line 260)
colnames
Function Call
coloc.m
coloc (Line 161)
colnames
Function Call
coloc.m
coloc (Line 205)
colnames
Function Call
corrtab.m
corrtab (Line 30)
colnames
Function Call
corrtab.m
corrtab (Line 31)
colnames
Function Call
corrtab.m
corrtab (Line 34)
colnames
Function Call
delongtest.m
delongtest (Line 20)
colnames
Function Call
delongtest.m
delongtest (Line 21)
colnames
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 157)
colnames
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 157)
colnames
Function Call
effPlotter.m
effPlotter (Line 352)
colnames
Function Call
effPlotter.m
effPlotter (Line 358)
colnames
Function Call
effPlotter.m
effPlotter (Line 363)
colnames
Function Call
fetchReplicationGWAS.m
fetchReplicationGWAS (Line 118)
colnames
Function Call
fetchReplicationGWAS.m
fetchReplicationGWAS (Line 122)
colnames
Function Call
fetchReplicationGWAS.m
fetchReplicationGWAS (Line 139)
colnames
Function Call
fetchReplicationGWAS.m
fetchReplicationGWAS (Line 149)
colnames
Function Call
fetchReplicationGWAS.m
fetchReplicationGWAS (Line 150)
colnames
Function Call
fetchReplicationGWAS.m
fetchReplicationGWAS (Line 153)
colnames
Function Call
fitSurvCox.m
fitSurvCox (Line 356)
colnames
Function Call
fitSurvCox.m
fitSurvCox (Line 657)
colnames
Function Call
fitSurvCox.m
fitSurvCox (Line 695)
colnames
Function Call
fitSurvCox.m
fitSurvCox (Line 720)
colnames
Function Call
fitSurvCox.m
fitSurvCox (Line 356)
colnames
Function Call
fitSurvCox.m
fitSurvCox (Line 657)
colnames
Function Call
fitSurvCox.m
fitSurvCox (Line 695)
colnames
Function Call
fitSurvCox.m
fitSurvCox (Line 720)
colnames
Function Call
gcorrplot.m
gcorrplot (Line 61)
colnames
Function Call
genePlotter.m
genePlotter (Line 176)
colnames
Function Call
genePlotter.m
genePlotter (Line 176)
colnames
Function Call
geneWrapper.m
parseAnnotatedCategories (Line 811)
colnames
Function Call
geneWrapper.m
parseAnnotatedCategories (Line 811)
colnames
Function Call
getCI.m
getCI (Line 44)
colnames
Function Call
getCI.m
getCI (Line 49)
colnames
Function Call
getCI.m
getCI (Line 44)
colnames
Function Call
getCI.m
getCI (Line 49)
colnames
Function Call
getHESIN_DEATH.m
getHESIN_DEATH (Line 96)
colnames
Function Call
getHESIN_DEATH.m
getHESIN_DEATH (Line 96)
colnames
Function Call
getPRS.m
getPRS (Line 30)
colnames
Function Call
getPhenoCov.m
getPhenoCov (Line 89)
colnames
Function Call
getPhenoCov.m
getPhenoCov (Line 89)
colnames
Function Call
gwasCaller.m
mergeDifferentGSSFolders (Line 1108)
colnames
Function Call
gwasCaller.m
runPheWas (Line 457)
colnames
Function Call
gwasrunner.m
gwasrunner (Line 933)
colnames
Function Call
gwasrunner.m
gwasrunner (Line 933)
colnames
Function Call
ldclump.m
snptag (Line 260)
colnames
Function Call
ldclump.m
snptag (Line 260)
colnames
Function Call
ldclumpPeaks.m
peakClump (Line 128)
colnames
Function Call
ldclumpPeaks.m
peakClump (Line 142)
colnames
Function Call
ldclumpPeaks.m
ldclumpPeaks (Line 28)
colnames
Function Call
ldclumpPeaks.m
peakClump (Line 128)
colnames
Function Call
ldclumpPeaks.m
peakClump (Line 142)
colnames
Function Call
ldclumpPeaks.m
ldclumpPeaks (Line 28)
colnames
Function Call
liftover.m
liftover (Line 104)
colnames
Function Call
liftover.m
liftover (Line 165)
colnames
Function Call
liftover.m
liftover (Line 33)
colnames
Function Call
liftover.m
liftover (Line 104)
colnames
Function Call
liftover.m
liftover (Line 165)
colnames
Function Call
liftover.m
liftover (Line 33)
colnames
Function Call
mapVariant2gene.m
mapVariant2gene (Line 84)
colnames
Function Call
mapVariant2gene.m
mapVariant2gene (Line 91)
colnames
Function Call
mapVariant2gene.m
mapVariant2gene (Line 84)
colnames
Function Call
mapVariant2gene.m
mapVariant2gene (Line 91)
colnames
Function Call
mediate.m
mediate (Line 129)
colnames
Function Call
mediate.m
mediate (Line 138)
colnames
Function Call
mediate.m
mediate (Line 155)
colnames
Function Call
mediate.m
mediate (Line 173)
colnames
Function Call
phenoParser.m
parsePhenoQuery (Line 1083)
colnames
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1318)
colnames
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1322)
colnames
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1348)
colnames
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1369)
colnames
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1398)
colnames
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1403)
colnames
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 2266)
colnames
Function Call
phenoParser.m
subsetUKBBtab (Line 2392)
colnames
Function Call
phenoParser.m
subsetUKBBtab (Line 2423)
colnames
Function Call
phenoParser.m
subsetUKBBtab (Line 2479)
colnames
Function Call
phenoParser.m
subsetUKBBtab (Line 2510)
colnames
Function Call
phenoParser.m
subsetUKBBtab (Line 2522)
colnames
Function Call
phenoParser.m
subsetUKBBtab (Line 2538)
colnames
Function Call
phenoParser.m
getTimeDatedfs (Line 3008)
colnames
Function Call
phenoParser.m
getTimeDatedfs (Line 3124)
colnames
Function Call
phenoParser.m
getTimeDatedfs (Line 3132)
colnames
Function Call
phenoParser.m
RAPcompressBasket (Line 3351)
colnames
Function Call
phenoParser.m
filterChunkData (Line 3398)
colnames
Function Call
phenoParser.m
filterChunkData (Line 3479)
colnames
Function Call
phenoParser.m
parsePhenoQuery (Line 1083)
colnames
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1318)
colnames
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1322)
colnames
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1348)
colnames
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1369)
colnames
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1398)
colnames
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1403)
colnames
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 2266)
colnames
Function Call
phenoParser.m
subsetUKBBtab (Line 2392)
colnames
Function Call
phenoParser.m
subsetUKBBtab (Line 2423)
colnames
Function Call
phenoParser.m
subsetUKBBtab (Line 2479)
colnames
Function Call
phenoParser.m
subsetUKBBtab (Line 2510)
colnames
Function Call
phenoParser.m
subsetUKBBtab (Line 2522)
colnames
Function Call
phenoParser.m
subsetUKBBtab (Line 2538)
colnames
Function Call
phenoParser.m
getTimeDatedfs (Line 3008)
colnames
Function Call
phenoParser.m
getTimeDatedfs (Line 3124)
colnames
Function Call
phenoParser.m
getTimeDatedfs (Line 3132)
colnames
Function Call
phenoParser.m
RAPcompressBasket (Line 3351)
colnames
Function Call
phenoParser.m
filterChunkData (Line 3398)
colnames
Function Call
phenoParser.m
filterChunkData (Line 3479)
colnames
Function Call
polyfun.m
finemapper (Line 279)
colnames
Function Call
polyfun.m
prunesumstat (Line 613)
colnames
Function Call
polyfun.m
finemapper (Line 279)
colnames
Function Call
polyfun.m
prunesumstat (Line 613)
colnames
Function Call
pruneGeneBasedResults.m
pruneGeneBasedResults (Line 10)
colnames
Function Call
pruneGeneBasedResults.m
pruneGeneBasedResults (Line 13)
colnames
Function Call
pruneGeneBasedResults.m
pruneGeneBasedResults (Line 19)
colnames
Function Call
quickgo.m
quickgo (Line 34)
colnames
Function Call
rarePlotter.m
rarePlotter (Line 331)
colnames
Function Call
rarePlotter.m
rarePlotter (Line 563)
colnames
Function Call
rarePlotter.m
rarePlotter (Line 67)
colnames
Function Call
rarePlotter.m
rarePlotter (Line 331)
colnames
Function Call
rarePlotter.m
rarePlotter (Line 563)
colnames
Function Call
rarePlotter.m
rarePlotter (Line 67)
colnames
Function Call
readvcf.m
readvcf (Line 108)
colnames
Function Call
readvcf.m
readvcf (Line 88)
colnames
Function Call
regionalPlotter.m
regionalPlotter (Line 107)
colnames
Function Call
regionalPlotter.m
regionalPlotter (Line 117)
colnames
Function Call
regionalPlotter.m
regionalPlotter (Line 78)
colnames
Function Call
regionalPlotter.m
regionalPlotter (Line 85)
colnames
Function Call
regionalPlotter.m
regionalPlotter (Line 87)
colnames
Function Call
ribocure.m
mergeDifferentGSSFolders (Line 1283)
colnames
Function Call
ribocure.m
runPheWas (Line 471)
colnames
Function Call
runVEP.m
vepParser (Line 250)
colnames
Function Call
run_bNMF.m
run_bNMF (Line 60)
colnames
Function Call
run_bNMF.m
run_bNMF (Line 60)
colnames
Function Call
ss2fuma.m
ss2fuma (Line 36)
colnames
Function Call
ss2fuma.m
ss2fuma (Line 36)
colnames
Function Call
table2Rdf.m
table2Rdf (Line 19)
colnames
Function Call
table2Rdf.m
table2Rdf (Line 19)
colnames
Function Call
table2pandasDF.m
table2pandasDF (Line 10)
colnames
Function Call
table2pandasDF.m
table2pandasDF (Line 10)
colnames
Function Call
trainCVmodels.m
plotSHAP (Line 575)
colnames
Function Call
trainCVmodels.m
plotSHAP (Line 620)
colnames
Function Call
trainCVmodels.m
plotSHAP (Line 621)
colnames
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
colnames
Toolbox

coloc.m

Path
D:\MAGE\dependencies\coloc\coloc.m
TypeFunction
Last modified30-May-2025 15:49:13
Size (bytes)48608

Required Files

FileImpactedRequiredDependency Type
EnsemblREST.m
prunecolocResult (Line 1010)
EnsemblREST
Function Call
MATLAB2Rconnector.m
callColoc (Line 835)
MATLAB2Rconnector
Function Call
bfilereader.m
fetchEgeneFiles (Line 1110)
bfilereader
Function Call
bfilereader.m
getLDmat (Line 941)
bfilereader
Function Call
colnames.m
coloc (Line 161)
colnames
Function Call
colnames.m
coloc (Line 205)
colnames
Function Call
duplicates.m
coloc (Line 114)
duplicates
Function Call
duplicates.m
coloc (Line 133)
duplicates
Function Call
duplicates.m
doColoc (Line 564)
duplicates
Function Call
duplicates.m
doColoc (Line 648)
duplicates
Function Call
getQCEID.m
coloc (Line 73)
getQCEID
Function Call
getRandomName.m
callColoc (Line 736)
getRandomName
Function Call
getbulkgeno.m
getLDmat (Line 866)
getbulkgeno
Function Call
getfilenames.m
fetchEgeneFiles (Line 1086)
getfilenames
Function Call
gnomad.m
coloc (Line 287)
gnomad
Function Call
liftover.m
coloc (Line 120)
liftover
Function Call
progressGen.m
fetchEgeneFiles (Line 1082)
progressGen
Function Call
progressGen.m
fetchEgeneFiles (Line 1089)
progressGen
Function Call
readGWASfile.m
coloc (Line 93)
readGWASfile
Function Call
tabix.m
fetcheqtlCatalogue (Line 507)
tabix
Function Call
tabix.m
fetcheqtlCatalogue (Line 510)
tabix
Function Call
tabix.m
fetcheqtlCatalogue (Line 513)
tabix
Function Call
terminate
getLDmat (Line 928)
terminate
Function Call
terminate
getLDmat (Line 979)
terminate
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
coloc
Toolbox
Parallel Computing Toolbox
coloc (Line 227)
Function Call
Parallel Computing Toolbox
coloc (Line 228)
Toolbox
Parallel Computing Toolbox
fetcheqtlCatalogue (Line 499)
Toolbox
Parallel Computing Toolbox
doColoc (Line 721)
Toolbox
Parallel Computing Toolbox
coloc (Line 79)
Function Call
Parallel Computing Toolbox
coloc (Line 80)
Function Call
Parallel Computing Toolbox
coloc (Line 82)
Function Call

combine_UKB_STRUCTs.m

Path
D:\MATLAB.dependencies\MAGE\UKBB.Toolbox\combine_UKB_STRUCTs.m
TypeFunction
Last modified08-Apr-2021 15:29:04
Size (bytes)1118

Impacted Files

FileImpactedRequiredDependency Type
phenoParser.m
getUKBtrait_prop (Line 369)
combine_UKB_STRUCTs
Function Call
phenoParser.m
getUKBtrait_prop (Line 369)
combine_UKB_STRUCTs
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
combine_UKB_STRUCTs
Toolbox

Contents.m

Path
D:\MAGE\dependencies\JSONLab\Contents.m
TypeScript
Last modified26-Jul-2020 23:16:13
Size (bytes)61963

Required Products

ProductImpactedDependency Type
MATLAB
Contents
Toolbox

corrtab.m

Path
D:\MAGE\source\corrtab.m
TypeFunction
Last modified13-Sep-2023 16:55:30
Size (bytes)1498

Required Files

FileImpactedRequiredDependency Type
colnames.m
corrtab (Line 30)
colnames
Function Call
colnames.m
corrtab (Line 31)
colnames
Function Call
colnames.m
corrtab (Line 34)
colnames
Function Call
pheatmap.m
corrtab (Line 34)
pheatmap
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
corrtab
Toolbox
Statistics and Machine Learning Toolbox
corrtab (Line 25)
Function Call

createGWASheader.m

Path
D:\MAGE\source\createGWASheader.m
TypeFunction
Last modified16-May-2025 13:06:33
Size (bytes)2213

Required Products

ProductImpactedDependency Type
MATLAB
createGWASheader
Toolbox

createGWASheader.m

Path
D:\MATLAB.dependencies\MAGE\createGWASheader.m
TypeFunction
Last modified16-May-2025 13:06:33
Size (bytes)2213

Impacted Files

FileImpactedRequiredDependency Type
MRlap.m
MRlap (Line 64)
createGWASheader
Function Call
MRlap.m
MRlap (Line 65)
createGWASheader
Function Call
MRrunner.m
MRrunner (Line 173)
createGWASheader
Function Call
MRrunner.m
MRrunner (Line 189)
createGWASheader
Function Call
fetchReplicationGWAS.m
fetchReplicationGWAS (Line 115)
createGWASheader
Function Call
polyfun.m
prunesumstat (Line 613)
createGWASheader
Function Call
polyfun.m
prunesumstat (Line 613)
createGWASheader
Function Call
regionalPlotter.m
regionalPlotter (Line 107)
createGWASheader
Function Call
regionalPlotter.m
regionalPlotter (Line 117)
createGWASheader
Function Call
regionalPlotter.m
regionalPlotter (Line 85)
createGWASheader
Function Call
ss2fuma.m
ss2fuma (Line 65)
createGWASheader
Function Call
ss2fuma.m
ss2fuma (Line 65)
createGWASheader
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
createGWASheader
Toolbox

createRvec.m

Path
D:\MAGE\dependencies\Rutils\createRvec.m
TypeFunction
Last modified04-May-2024 13:50:58
Size (bytes)881

Required Products

ProductImpactedDependency Type
MATLAB
createRvec
Toolbox

createRvec.m

Path
D:\MATLAB.dependencies\MAGE\Rutils\createRvec.m
TypeFunction
Last modified04-May-2024 13:50:58
Size (bytes)881

Impacted Files

FileImpactedRequiredDependency Type
KEGGview.m
KEGGview (Line 157)
createRvec
Function Call
KEGGview.m
KEGGview (Line 182)
createRvec
Function Call
KEGGview.m
KEGGview (Line 199)
createRvec
Function Call
KEGGview.m
KEGGview (Line 204)
createRvec
Function Call
fitSurvCox.m
fitSurvCox (Line 451)
createRvec
Function Call
fitSurvCox.m
fitSurvCox (Line 451)
createRvec
Function Call
table2Rdf.m
table2Rdf (Line 101)
createRvec
Function Call
table2Rdf.m
table2Rdf (Line 104)
createRvec
Function Call
table2Rdf.m
table2Rdf (Line 115)
createRvec
Function Call
table2Rdf.m
table2Rdf (Line 130)
createRvec
Function Call
table2Rdf.m
table2Rdf (Line 151)
createRvec
Function Call
table2Rdf.m
table2Rdf (Line 101)
createRvec
Function Call
table2Rdf.m
table2Rdf (Line 104)
createRvec
Function Call
table2Rdf.m
table2Rdf (Line 115)
createRvec
Function Call
table2Rdf.m
table2Rdf (Line 130)
createRvec
Function Call
table2Rdf.m
table2Rdf (Line 151)
createRvec
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
createRvec
Toolbox

decodevarname.m

Path
D:\MAGE\dependencies\JSONLab\decodevarname.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)2416

Required Files

FileImpactedRequiredDependency Type
jsonopt.m
decodevarname (Line 38)
jsonopt
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
decodevarname
Toolbox

decodevarname.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\decodevarname.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)2416

Impacted Files

FileImpactedRequiredDependency Type
savebj.m
cell2ubjson (Line 342)
decodevarname
Function Call
savebj.m
cell2ubjson (Line 348)
decodevarname
Function Call
savebj.m
struct2ubjson (Line 400)
decodevarname
Function Call
savebj.m
struct2ubjson (Line 422)
decodevarname
Function Call
savebj.m
map2ubjson (Line 463)
decodevarname
Function Call
savebj.m
str2ubjson (Line 497)
decodevarname
Function Call
savebj.m
str2ubjson (Line 507)
decodevarname
Function Call
savebj.m
mat2ubjson (Line 550)
decodevarname
Function Call
savebj.m
mat2ubjson (Line 553)
decodevarname
Function Call
savebj.m
mat2ubjson (Line 563)
decodevarname
Function Call
savebj.m
mat2ubjson (Line 565)
decodevarname
Function Call
savebj.m
cell2ubjson (Line 342)
decodevarname
Function Call
savebj.m
cell2ubjson (Line 348)
decodevarname
Function Call
savebj.m
struct2ubjson (Line 400)
decodevarname
Function Call
savebj.m
struct2ubjson (Line 422)
decodevarname
Function Call
savebj.m
map2ubjson (Line 463)
decodevarname
Function Call
savebj.m
str2ubjson (Line 497)
decodevarname
Function Call
savebj.m
str2ubjson (Line 507)
decodevarname
Function Call
savebj.m
mat2ubjson (Line 550)
decodevarname
Function Call
savebj.m
mat2ubjson (Line 553)
decodevarname
Function Call
savebj.m
mat2ubjson (Line 563)
decodevarname
Function Call
savebj.m
mat2ubjson (Line 565)
decodevarname
Function Call
savejson.m
cell2json (Line 315)
decodevarname
Function Call
savejson.m
cell2json (Line 321)
decodevarname
Function Call
savejson.m
struct2json (Line 364)
decodevarname
Function Call
savejson.m
struct2json (Line 373)
decodevarname
Function Call
savejson.m
struct2json (Line 387)
decodevarname
Function Call
savejson.m
map2json (Line 461)
decodevarname
Function Call
savejson.m
map2json (Line 470)
decodevarname
Function Call
savejson.m
str2json (Line 511)
decodevarname
Function Call
savejson.m
str2json (Line 519)
decodevarname
Function Call
savejson.m
str2json (Line 525)
decodevarname
Function Call
savejson.m
mat2json (Line 566)
decodevarname
Function Call
savejson.m
mat2json (Line 574)
decodevarname
Function Call
savejson.m
mat2json (Line 576)
decodevarname
Function Call
savejson.m
cell2json (Line 315)
decodevarname
Function Call
savejson.m
cell2json (Line 321)
decodevarname
Function Call
savejson.m
struct2json (Line 364)
decodevarname
Function Call
savejson.m
struct2json (Line 373)
decodevarname
Function Call
savejson.m
struct2json (Line 387)
decodevarname
Function Call
savejson.m
map2json (Line 461)
decodevarname
Function Call
savejson.m
map2json (Line 470)
decodevarname
Function Call
savejson.m
str2json (Line 511)
decodevarname
Function Call
savejson.m
str2json (Line 519)
decodevarname
Function Call
savejson.m
str2json (Line 525)
decodevarname
Function Call
savejson.m
mat2json (Line 566)
decodevarname
Function Call
savejson.m
mat2json (Line 574)
decodevarname
Function Call
savejson.m
mat2json (Line 576)
decodevarname
Function Call

Required Files

FileImpactedRequiredDependency Type
jsonopt.m
decodevarname (Line 38)
jsonopt
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
decodevarname
Toolbox

defineArgument

Problems

Impacted Files

FileImpactedRequiredDependency Type
defineqfc.m
defineqfc (Line 102)
defineArgument
Function Call
defineqfc.m
defineqfc (Line 103)
defineArgument
Function Call
defineqfc.m
defineqfc (Line 123)
defineArgument
Function Call
defineqfc.m
defineqfc (Line 124)
defineArgument
Function Call
defineqfc.m
defineqfc (Line 125)
defineArgument
Function Call
defineqfc.m
defineqfc (Line 126)
defineArgument
Function Call
defineqfc.m
defineqfc (Line 135)
defineArgument
Function Call
defineqfc.m
defineqfc (Line 23)
defineArgument
Function Call
defineqfc.m
defineqfc (Line 41)
defineArgument
Function Call
defineqfc.m
defineqfc (Line 51)
defineArgument
Function Call
defineqfc.m
defineqfc (Line 61)
defineArgument
Function Call
defineqfc.m
defineqfc (Line 62)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 100)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 101)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 102)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 103)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 104)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 21)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 28)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 35)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 36)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 48)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 49)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 56)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 57)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 64)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 65)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 72)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 73)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 79)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 80)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 81)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 82)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 88)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 95)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 96)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 97)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 98)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 99)
defineArgument
Function Call
defineqfc.mlx
defineqfc (Line 9)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 100)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 101)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 102)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 103)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 104)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 21)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 28)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 35)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 36)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 48)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 49)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 56)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 57)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 64)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 65)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 72)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 73)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 79)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 80)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 81)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 82)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 88)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 95)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 96)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 97)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 98)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 99)
defineArgument
Function Call
qfc.mlx
defineqfc (Line 9)
defineArgument
Function Call

defineOutput

Problems

Impacted Files

FileImpactedRequiredDependency Type
defineqfc.m
defineqfc (Line 104)
defineOutput
Function Call
defineqfc.m
defineqfc (Line 136)
defineOutput
Function Call
defineqfc.m
defineqfc (Line 24)
defineOutput
Function Call
defineqfc.m
defineqfc (Line 42)
defineOutput
Function Call
defineqfc.m
defineqfc (Line 52)
defineOutput
Function Call
defineqfc.m
defineqfc (Line 63)
defineOutput
Function Call
defineqfc.mlx
defineqfc (Line 105)
defineOutput
Function Call
defineqfc.mlx
defineqfc (Line 10)
defineOutput
Function Call
defineqfc.mlx
defineqfc (Line 22)
defineOutput
Function Call
defineqfc.mlx
defineqfc (Line 29)
defineOutput
Function Call
defineqfc.mlx
defineqfc (Line 37)
defineOutput
Function Call
defineqfc.mlx
defineqfc (Line 50)
defineOutput
Function Call
defineqfc.mlx
defineqfc (Line 58)
defineOutput
Function Call
defineqfc.mlx
defineqfc (Line 66)
defineOutput
Function Call
defineqfc.mlx
defineqfc (Line 89)
defineOutput
Function Call
qfc.mlx
defineqfc (Line 105)
defineOutput
Function Call
qfc.mlx
defineqfc (Line 10)
defineOutput
Function Call
qfc.mlx
defineqfc (Line 22)
defineOutput
Function Call
qfc.mlx
defineqfc (Line 29)
defineOutput
Function Call
qfc.mlx
defineqfc (Line 37)
defineOutput
Function Call
qfc.mlx
defineqfc (Line 50)
defineOutput
Function Call
qfc.mlx
defineqfc (Line 58)
defineOutput
Function Call
qfc.mlx
defineqfc (Line 66)
defineOutput
Function Call
qfc.mlx
defineqfc (Line 89)
defineOutput
Function Call

defineqfc.m

Path
D:\MAGE\dependencies\qfc\defineqfc.m
TypeFunction
Last modified22-Apr-2022 09:58:05
Size (bytes)8623

Required Files

FileImpactedRequiredDependency Type
defineArgument
defineqfc (Line 102)
defineArgument
Function Call
defineArgument
defineqfc (Line 103)
defineArgument
Function Call
defineArgument
defineqfc (Line 123)
defineArgument
Function Call
defineArgument
defineqfc (Line 124)
defineArgument
Function Call
defineArgument
defineqfc (Line 125)
defineArgument
Function Call
defineArgument
defineqfc (Line 126)
defineArgument
Function Call
defineArgument
defineqfc (Line 135)
defineArgument
Function Call
defineArgument
defineqfc (Line 23)
defineArgument
Function Call
defineArgument
defineqfc (Line 41)
defineArgument
Function Call
defineArgument
defineqfc (Line 51)
defineArgument
Function Call
defineArgument
defineqfc (Line 61)
defineArgument
Function Call
defineArgument
defineqfc (Line 62)
defineArgument
Function Call
defineOutput
defineqfc (Line 104)
defineOutput
Function Call
defineOutput
defineqfc (Line 136)
defineOutput
Function Call
defineOutput
defineqfc (Line 24)
defineOutput
Function Call
defineOutput
defineqfc (Line 42)
defineOutput
Function Call
defineOutput
defineqfc (Line 52)
defineOutput
Function Call
defineOutput
defineqfc (Line 63)
defineOutput
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
defineqfc
Toolbox

defineqfc.mlx

Path
D:\MAGE\dependencies\qfc\defineqfc.mlx
TypeLive Function
Last modified22-Apr-2022 10:02:50
Size (bytes)5395

Required Files

FileImpactedRequiredDependency Type
defineArgument
defineqfc (Line 100)
defineArgument
Function Call
defineArgument
defineqfc (Line 101)
defineArgument
Function Call
defineArgument
defineqfc (Line 102)
defineArgument
Function Call
defineArgument
defineqfc (Line 103)
defineArgument
Function Call
defineArgument
defineqfc (Line 104)
defineArgument
Function Call
defineArgument
defineqfc (Line 21)
defineArgument
Function Call
defineArgument
defineqfc (Line 28)
defineArgument
Function Call
defineArgument
defineqfc (Line 35)
defineArgument
Function Call
defineArgument
defineqfc (Line 36)
defineArgument
Function Call
defineArgument
defineqfc (Line 48)
defineArgument
Function Call
defineArgument
defineqfc (Line 49)
defineArgument
Function Call
defineArgument
defineqfc (Line 56)
defineArgument
Function Call
defineArgument
defineqfc (Line 57)
defineArgument
Function Call
defineArgument
defineqfc (Line 64)
defineArgument
Function Call
defineArgument
defineqfc (Line 65)
defineArgument
Function Call
defineArgument
defineqfc (Line 72)
defineArgument
Function Call
defineArgument
defineqfc (Line 73)
defineArgument
Function Call
defineArgument
defineqfc (Line 79)
defineArgument
Function Call
defineArgument
defineqfc (Line 80)
defineArgument
Function Call
defineArgument
defineqfc (Line 81)
defineArgument
Function Call
defineArgument
defineqfc (Line 82)
defineArgument
Function Call
defineArgument
defineqfc (Line 88)
defineArgument
Function Call
defineArgument
defineqfc (Line 95)
defineArgument
Function Call
defineArgument
defineqfc (Line 96)
defineArgument
Function Call
defineArgument
defineqfc (Line 97)
defineArgument
Function Call
defineArgument
defineqfc (Line 98)
defineArgument
Function Call
defineArgument
defineqfc (Line 99)
defineArgument
Function Call
defineArgument
defineqfc (Line 9)
defineArgument
Function Call
defineOutput
defineqfc (Line 105)
defineOutput
Function Call
defineOutput
defineqfc (Line 10)
defineOutput
Function Call
defineOutput
defineqfc (Line 22)
defineOutput
Function Call
defineOutput
defineqfc (Line 29)
defineOutput
Function Call
defineOutput
defineqfc (Line 37)
defineOutput
Function Call
defineOutput
defineqfc (Line 50)
defineOutput
Function Call
defineOutput
defineqfc (Line 58)
defineOutput
Function Call
defineOutput
defineqfc (Line 66)
defineOutput
Function Call
defineOutput
defineqfc (Line 89)
defineOutput
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
defineqfc
Toolbox

delongtest.m

Path
D:\MAGE\dependencies\Rwrappers\delongtest.m
TypeFunction
Last modified22-May-2023 11:49:45
Size (bytes)1845

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
delongtest (Line 40)
MATLAB2Rconnector
Function Call
colnames.m
delongtest (Line 20)
colnames
Function Call
colnames.m
delongtest (Line 21)
colnames
Function Call
getRandomName.m
delongtest (Line 12)
getRandomName
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
delongtest
Toolbox

dos2unix.m

Path
D:\MAGE\source\dos2unix.m
TypeFunction
Last modified04-Feb-2023 12:23:09
Size (bytes)1611

Required Files

FileImpactedRequiredDependency Type
makeWSLpath.m
dos2unix (Line 20)
makeWSLpath
Function Call
makeWSLpath.m
dos2unix (Line 22)
makeWSLpath
Function Call
makeWSLpath.m
mustBeUnixFile (Line 32)
makeWSLpath
Function Call
makeWSLpath.m
checkCR (Line 52)
makeWSLpath
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
dos2unix
Toolbox

dos2unix.m

Path
D:\MATLAB.dependencies\MAGE\dos2unix.m
TypeFunction
Last modified04-Feb-2023 12:23:09
Size (bytes)1611

Impacted Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
MATLAB2Rconnector (Line 33)
dos2unix
Function Call
MATLAB2Rconnector.m
MATLAB2Rconnector (Line 33)
dos2unix
Function Call
SBayesRC.m
SBayesRC (Line 140)
dos2unix
Function Call
SBayesRC.m
SBayesRC (Line 80)
dos2unix
Function Call
SBayesRC.m
SBayesRC (Line 85)
dos2unix
Function Call
SBayesRC.m
SBayesRC (Line 140)
dos2unix
Function Call
SBayesRC.m
SBayesRC (Line 80)
dos2unix
Function Call
SBayesRC.m
SBayesRC (Line 85)
dos2unix
Function Call
gcta.m
gcta (Line 131)
dos2unix
Function Call
gcta.m
gcta (Line 136)
dos2unix
Function Call
gcta.m
gcta (Line 131)
dos2unix
Function Call
gcta.m
gcta (Line 136)
dos2unix
Function Call
ldsc.m
ldsc (Line 164)
dos2unix
Function Call
metal.m
metal (Line 115)
dos2unix
Function Call
metal.m
metal (Line 155)
dos2unix
Function Call
metal.m
metal (Line 115)
dos2unix
Function Call
metal.m
metal (Line 155)
dos2unix
Function Call
polyfun.m
polyfun (Line 141)
dos2unix
Function Call
polyfun.m
fetchLDmat (Line 521)
dos2unix
Function Call
polyfun.m
polyfun (Line 52)
dos2unix
Function Call
polyfun.m
polyfun (Line 60)
dos2unix
Function Call
polyfun.m
polyfun (Line 141)
dos2unix
Function Call
polyfun.m
fetchLDmat (Line 521)
dos2unix
Function Call
polyfun.m
polyfun (Line 52)
dos2unix
Function Call
polyfun.m
polyfun (Line 60)
dos2unix
Function Call
pops.m
pops (Line 54)
dos2unix
Function Call
pops.m
pops (Line 54)
dos2unix
Function Call
regenie.m
regenie (Line 120)
dos2unix
Function Call
regenie.m
regenie (Line 120)
dos2unix
Function Call
runVEP.m
runVEP (Line 95)
dos2unix
Function Call

Required Files

FileImpactedRequiredDependency Type
makeWSLpath.m
dos2unix (Line 20)
makeWSLpath
Function Call
makeWSLpath.m
dos2unix (Line 22)
makeWSLpath
Function Call
makeWSLpath.m
mustBeUnixFile (Line 32)
makeWSLpath
Function Call
makeWSLpath.m
checkCR (Line 52)
makeWSLpath
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
dos2unix
Toolbox

duplicates.m

Path
D:\MAGE\source\duplicates.m
TypeFunction
Last modified11-Mar-2022 18:47:58
Size (bytes)656

Required Products

ProductImpactedDependency Type
MATLAB
duplicates
Toolbox

duplicates.m

Path
D:\MATLAB.dependencies\MAGE\duplicates.m
TypeFunction
Last modified11-Mar-2022 18:47:58
Size (bytes)656

Impacted Files

FileImpactedRequiredDependency Type
call_regenie.m
call_regenie (Line 426)
duplicates
Function Call
call_regenie.m
call_regenie (Line 426)
duplicates
Function Call
coloc.m
coloc (Line 114)
duplicates
Function Call
coloc.m
coloc (Line 133)
duplicates
Function Call
coloc.m
doColoc (Line 564)
duplicates
Function Call
coloc.m
doColoc (Line 648)
duplicates
Function Call
genePlotter.m
genePlotter (Line 304)
duplicates
Function Call
genePlotter.m
genePlotter (Line 304)
duplicates
Function Call
geneWrapper.m
parseAnnotatedCategories (Line 833)
duplicates
Function Call
geneWrapper.m
parseAnnotatedCategories (Line 833)
duplicates
Function Call
getHESIN_DEATH.m
getHESIN_DEATH (Line 688)
duplicates
Function Call
getHESIN_DEATH.m
getHESIN_DEATH (Line 688)
duplicates
Function Call
getInsampleLD.m
getInsampleLD (Line 41)
duplicates
Function Call
getInsampleLD.m
getInsampleLD (Line 41)
duplicates
Function Call
getbulkgeno.m
getbulkgeno (Line 360)
duplicates
Function Call
getbulkgeno.m
getbulkgeno (Line 360)
duplicates
Function Call
gwasCaller.m
mergeDifferentGSSFolders (Line 1086)
duplicates
Function Call
ldclump.m
snptag (Line 307)
duplicates
Function Call
ldclump.m
snptag (Line 307)
duplicates
Function Call
mapVariant2gene.m
mapVariant2gene (Line 96)
duplicates
Function Call
mapVariant2gene.m
mapVariant2gene (Line 96)
duplicates
Function Call
phenoParser.m
parsePhenoQuery (Line 1147)
duplicates
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 2121)
duplicates
Function Call
phenoParser.m
subsetUKBBtab (Line 2656)
duplicates
Function Call
phenoParser.m
parsePhenoQuery (Line 1147)
duplicates
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 2121)
duplicates
Function Call
phenoParser.m
subsetUKBBtab (Line 2656)
duplicates
Function Call
polyfun.m
prunesumstat (Line 624)
duplicates
Function Call
polyfun.m
prunesumstat (Line 624)
duplicates
Function Call
ribocure.m
mergeDifferentGSSFolders (Line 1261)
duplicates
Function Call
runVEP.m
vepParser (Line 236)
duplicates
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
duplicates
Toolbox

dx_extract_dataset.m

Path
D:\MAGE\dependencies\dxtoolkit\dx_extract_dataset.m
TypeFunction
Last modified26-May-2025 15:34:33
Size (bytes)19363

Required Files

FileImpactedRequiredDependency Type
UKBBasketParser.m
dx_extract_dataset (Line 457)
UKBBasketParser
Function Call
UKBBasketParser.m
dx_extract_dataset (Line 474)
UKBBasketParser
Function Call
UKB_HESIN_DEATH_2mat.m
dx_extract_dataset (Line 120)
UKB_HESIN_DEATH_2mat
Function Argument
UKB_HESIN_DEATH_2mat.m
dx_extract_dataset (Line 488)
UKB_HESIN_DEATH_2mat
Function Call
colnames.m
dx_extract_dataset (Line 157)
colnames
Function Call
dx_instance.txt
dx_extract_dataset (Line 27)
dx_instance
Function Argument
getRandomName.m
dx_extract_dataset (Line 202)
getRandomName
Function Call
getRandomName.m
dx_extract_dataset (Line 204)
getRandomName
Function Call
getUKBdictionary.m
dx_extract_dataset (Line 40)
getUKBdictionary
Function Call
getfilenames.m
dx_extract_dataset (Line 427)
getfilenames
Function Call
getfilenames.m
dx_extract_dataset (Line 440)
getfilenames
Function Call
makeWSLpath.m
dx_extract_dataset (Line 209)
makeWSLpath
Function Call
makeWSLpath.m
dx_extract_dataset (Line 411)
makeWSLpath
Function Call
natsort.m
dx_extract_dataset (Line 149)
natsort
Function Call
phenoParser.m
dx_extract_dataset (Line 14)
phenoParser
Function Argument
runbash.m
dx_extract_dataset (Line 145)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 147)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 152)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 211)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 256)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 258)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 26)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 291)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 320)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 340)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 355)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 412)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 416)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
dx_extract_dataset
Toolbox

dx_extract_dataset.m

Path
D:\MATLAB.dependencies\MAGE\dxtoolkit\dx_extract_dataset.m
TypeFunction
Last modified26-May-2025 15:34:33
Size (bytes)19363

Impacted Files

FileImpactedRequiredDependency Type
phenoParser.m
parsePhenoQuery (Line 1013)
dx_extract_dataset
Function Call
phenoParser.m
parsePhenoQuery (Line 1149)
dx_extract_dataset
Function Call
phenoParser.m
parsePhenoQuery (Line 1013)
dx_extract_dataset
Function Call
phenoParser.m
parsePhenoQuery (Line 1149)
dx_extract_dataset
Function Call

Required Files

FileImpactedRequiredDependency Type
UKBBasketParser.m
dx_extract_dataset (Line 457)
UKBBasketParser
Function Call
UKBBasketParser.m
dx_extract_dataset (Line 474)
UKBBasketParser
Function Call
UKB_HESIN_DEATH_2mat.m
dx_extract_dataset (Line 120)
UKB_HESIN_DEATH_2mat
Function Argument
UKB_HESIN_DEATH_2mat.m
dx_extract_dataset (Line 488)
UKB_HESIN_DEATH_2mat
Function Call
colnames.m
dx_extract_dataset (Line 157)
colnames
Function Call
dx_instance.txt
dx_extract_dataset (Line 27)
dx_instance
Function Argument
getRandomName.m
dx_extract_dataset (Line 202)
getRandomName
Function Call
getRandomName.m
dx_extract_dataset (Line 204)
getRandomName
Function Call
getUKBdictionary.m
dx_extract_dataset (Line 40)
getUKBdictionary
Function Call
getfilenames.m
dx_extract_dataset (Line 427)
getfilenames
Function Call
getfilenames.m
dx_extract_dataset (Line 440)
getfilenames
Function Call
makeWSLpath.m
dx_extract_dataset (Line 209)
makeWSLpath
Function Call
makeWSLpath.m
dx_extract_dataset (Line 411)
makeWSLpath
Function Call
natsort.m
dx_extract_dataset (Line 149)
natsort
Function Call
phenoParser.m
dx_extract_dataset (Line 14)
phenoParser
Function Argument
runbash.m
dx_extract_dataset (Line 145)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 147)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 152)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 211)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 256)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 258)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 26)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 291)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 320)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 340)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 355)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 412)
runbash
Function Call
runbash.m
dx_extract_dataset (Line 416)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
dx_extract_dataset
Toolbox

dx_instance.txt

Problems

Impacted Files

FileImpactedRequiredDependency Type
dx_extract_dataset.m
dx_extract_dataset (Line 27)
dx_instance
Function Argument
dx_extract_dataset.m
dx_extract_dataset (Line 27)
dx_instance
Function Argument

effDotPlotter.m

Path
D:\MAGE\source\effDotPlotter.m
TypeFunction
Last modified14-Apr-2025 10:28:08
Size (bytes)21056

Required Files

FileImpactedRequiredDependency Type
get_colormap.m
effDotPlotter (Line 102)
get_colormap
Function Call
get_colormap.m
effDotPlotter (Line 248)
get_colormap
Function Call
natsort.m
effDotPlotter (Line 193)
natsort
Function Call
natsort.m
effDotPlotter (Line 194)
natsort
Function Call
padjust.m
effDotPlotter (Line 118)
padjust
Function Call
padjust.m
effDotPlotter (Line 124)
padjust
Function Call
palette.m
effDotPlotter (Line 184)
palette
Function Call
shade.m
effDotPlotter (Line 410)
shade
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
effDotPlotter
Toolbox

effNetPlotter.m

Path
D:\MAGE\source\effNetPlotter.m
TypeFunction
Last modified18-Mar-2025 09:27:51
Size (bytes)20877

Required Files

FileImpactedRequiredDependency Type
getMarkerBounds.m
effNetPlotter (Line 301)
getMarkerBounds
Function Call
getMarkerBounds.m
effNetPlotter (Line 407)
getMarkerBounds
Function Call
get_colormap.m
effNetPlotter (Line 115)
get_colormap
Function Call
get_colormap.m
effNetPlotter (Line 125)
get_colormap
Function Call
get_colormap.m
effNetPlotter (Line 434)
get_colormap
Function Call
get_colormap.m
effNetPlotter (Line 448)
get_colormap
Function Call
line2arrow.m
effNetPlotter (Line 496)
line2arrow
Function Call
padjust.m
effNetPlotter (Line 79)
padjust
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
effNetPlotter
Toolbox
Statistics and Machine Learning Toolbox
effNetPlotter (Line 199)
Function Call

effPlotter.m

Path
D:\MAGE\source\effPlotter.m
TypeFunction
Last modified15-Apr-2025 12:36:25
Size (bytes)47804

Required Files

FileImpactedRequiredDependency Type
chi2pval.m
effPlotter (Line 372)
chi2pval
Function Call
colnames.m
effPlotter (Line 352)
colnames
Function Call
colnames.m
effPlotter (Line 358)
colnames
Function Call
colnames.m
effPlotter (Line 363)
colnames
Function Call
getCI.m
effPlotter (Line 380)
getCI
Function Call
getRandomName.m
effPlotter (Line 247)
getRandomName
Function Call
get_colormap.m
addPcbar (Line 1007)
get_colormap
Function Call
get_colormap.m
effPlotter (Line 261)
get_colormap
Function Call
palette.m
effPlotter (Line 250)
palette
Function Call
plotboxpos.m
checkTitle (Line 1162)
plotboxpos
Function Call
plotboxpos.m
checkTitle (Line 1189)
plotboxpos
Function Call
plotboxpos.m
effPlotter (Line 864)
plotboxpos
Function Call
shade.m
effPlotter (Line 920)
shade
Function Call
shade.m
effPlotter (Line 953)
shade
Function Call
struct2array.m
effPlotter (Line 350)
struct2array
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
effPlotter
Toolbox

encodevarname.m

Path
D:\MAGE\dependencies\JSONLab\encodevarname.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)2241

Required Products

ProductImpactedDependency Type
MATLAB
encodevarname
Toolbox

encodevarname.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\encodevarname.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)2241

Impacted Files

FileImpactedRequiredDependency Type
jdataencode.m
graph2jd (Line 360)
encodevarname
Function Call
jdataencode.m
graph2jd (Line 360)
encodevarname
Function Call
jload.m
jload (Line 86)
encodevarname
Function Call
jsave.m
jsave (Line 85)
encodevarname
Function Call
loadbj.m
parse_object (Line 392)
encodevarname
Function Call
loadbj.m
parse_object (Line 392)
encodevarname
Function Call
loadjson.m
parse_object (Line 471)
encodevarname
Function Call
loadjson.m
parse_object (Line 471)
encodevarname
Function Call
loadmsgpack.m
parsemap (Line 259)
encodevarname
Function Call
loadmsgpack.m
parsemap (Line 259)
encodevarname
Function Call
savebj.m
struct2ubjson (Line 388)
encodevarname
Function Call
savebj.m
struct2ubjson (Line 388)
encodevarname
Function Call
savejson.m
struct2json (Line 358)
encodevarname
Function Call
savejson.m
struct2json (Line 394)
encodevarname
Function Call
savejson.m
struct2json (Line 358)
encodevarname
Function Call
savejson.m
struct2json (Line 394)
encodevarname
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
encodevarname
Toolbox

EnhancedVolcano.m

Path
D:\MAGE\dependencies\Rwrappers\EnhancedVolcano.m
TypeFunction
Last modified05-Feb-2024 12:42:45
Size (bytes)3446

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
EnhancedVolcano (Line 86)
MATLAB2Rconnector
Function Call
getRandomName.m
EnhancedVolcano (Line 42)
getRandomName
Function Call
struct2rfun.m
EnhancedVolcano (Line 83)
struct2rfun
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
EnhancedVolcano
Toolbox

enrichr.m

Path
D:\MAGE\dependencies\Rwrappers\enrichr.m
TypeFunction
Last modified20-Jun-2023 15:50:35
Size (bytes)9513

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
enrichr (Line 56)
MATLAB2Rconnector
Function Call
MATLAB2Rconnector.m
getEnrichrDB (Line 84)
MATLAB2Rconnector
Function Call
enrichr.m
getEnrichrDB (Line 88)
enrichr
Function Argument
enrichr.m
getEnrichrDB (Line 94)
enrichr
Function Argument
enrichr_dbs.txt
getEnrichrDB (Line 85)
enrichr_dbs
Function Argument
getRandomName.m
enrichr (Line 31)
getRandomName
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
enrichr
Toolbox

enrichr.m

Path
D:\MATLAB.dependencies\MAGE\Rwrappers\enrichr.m
TypeFunction
Last modified20-Jun-2023 15:50:35
Size (bytes)9513

Impacted Files

FileImpactedRequiredDependency Type
enrichr.m
getEnrichrDB (Line 88)
enrichr
Function Argument
enrichr.m
getEnrichrDB (Line 94)
enrichr
Function Argument
enrichr.m
getEnrichrDB (Line 88)
enrichr
Function Argument
enrichr.m
getEnrichrDB (Line 94)
enrichr
Function Argument

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
enrichr (Line 56)
MATLAB2Rconnector
Function Call
MATLAB2Rconnector.m
getEnrichrDB (Line 84)
MATLAB2Rconnector
Function Call
enrichr.m
getEnrichrDB (Line 88)
enrichr
Function Argument
enrichr.m
getEnrichrDB (Line 94)
enrichr
Function Argument
enrichr_dbs.txt
getEnrichrDB (Line 85)
enrichr_dbs
Function Argument
getRandomName.m
enrichr (Line 31)
getRandomName
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
enrichr
Toolbox

enrichr_dbs.txt

Problems

Impacted Files

FileImpactedRequiredDependency Type
enrichr.m
getEnrichrDB (Line 85)
enrichr_dbs
Function Argument
enrichr.m
getEnrichrDB (Line 85)
enrichr_dbs
Function Argument

EnsemblREST.m

Path
D:\MAGE\source\EnsemblREST.m
TypeFunction
Last modified08-Apr-2025 16:24:37
Size (bytes)20999

Required Files

FileImpactedRequiredDependency Type
EnsemblREST.m
rest_eqtl (Line 348)
EnsemblREST
Function Call
colnames.m
aggregateCells (Line 561)
colnames
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
EnsemblREST
Toolbox

EnsemblREST.m

Path
D:\MATLAB.dependencies\MAGE\EnsemblREST.m
TypeFunction
Last modified08-Apr-2025 16:24:37
Size (bytes)20999

Impacted Files

FileImpactedRequiredDependency Type
EnsemblREST.m
rest_eqtl (Line 348)
EnsemblREST
Function Call
EnsemblREST.m
rest_eqtl (Line 348)
EnsemblREST
Function Call
KEGGview.m
findPathIds (Line 227)
EnsemblREST
Function Call
callVEP.m
getrawVEP (Line 114)
EnsemblREST
Function Call
callVEP.m
getrawVEP (Line 114)
EnsemblREST
Function Call
coloc.m
prunecolocResult (Line 1010)
EnsemblREST
Function Call
geneWrapper.m
innerWrapperSingle (Line 533)
EnsemblREST
Function Call
geneWrapper.m
innerWrapperSingle (Line 561)
EnsemblREST
Function Call
geneWrapper.m
innerWrapperSingle (Line 658)
EnsemblREST
Function Call
geneWrapper.m
innerWrapperSingle (Line 533)
EnsemblREST
Function Call
geneWrapper.m
innerWrapperSingle (Line 561)
EnsemblREST
Function Call
geneWrapper.m
innerWrapperSingle (Line 658)
EnsemblREST
Function Call
getWES.m
getWESsingle (Line 244)
EnsemblREST
Function Call
getWES.m
getWESsingle (Line 264)
EnsemblREST
Function Call
gwasCaller.m
gwasCaller (Line 193)
EnsemblREST
Function Call
liftover.m
liftover (Line 195)
EnsemblREST
Function Call
liftover.m
liftover (Line 214)
EnsemblREST
Function Call
liftover.m
liftover (Line 195)
EnsemblREST
Function Call
liftover.m
liftover (Line 214)
EnsemblREST
Function Call
mapVariant2gene.m
mapVariant2gene (Line 107)
EnsemblREST
Function Call
mapVariant2gene.m
mapVariant2gene (Line 115)
EnsemblREST
Function Call
mapVariant2gene.m
mapVariant2gene (Line 154)
EnsemblREST
Function Call
mapVariant2gene.m
mapVariant2gene (Line 223)
EnsemblREST
Function Call
mapVariant2gene.m
mapVariant2gene (Line 230)
EnsemblREST
Function Call
mapVariant2gene.m
mapVariant2gene (Line 242)
EnsemblREST
Function Call
mapVariant2gene.m
mapVariant2gene (Line 40)
EnsemblREST
Function Call
mapVariant2gene.m
mapVariant2gene (Line 107)
EnsemblREST
Function Call
mapVariant2gene.m
mapVariant2gene (Line 121)
EnsemblREST
Function Call
mapVariant2gene.m
mapVariant2gene (Line 157)
EnsemblREST
Function Call
mapVariant2gene.m
mapVariant2gene (Line 226)
EnsemblREST
Function Call
mapVariant2gene.m
mapVariant2gene (Line 233)
EnsemblREST
Function Call
mapVariant2gene.m
mapVariant2gene (Line 245)
EnsemblREST
Function Call
mapVariant2gene.m
mapVariant2gene (Line 40)
EnsemblREST
Function Call
openGWAS.m
openGWAS (Line 176)
EnsemblREST
Function Call
openGWAS.m
openGWAS (Line 180)
EnsemblREST
Function Call
ribocure.m
ribocure (Line 191)
EnsemblREST
Function Call

Required Files

FileImpactedRequiredDependency Type
EnsemblREST.m
rest_eqtl (Line 348)
EnsemblREST
Function Call
colnames.m
aggregateCells (Line 561)
colnames
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
EnsemblREST
Toolbox

ensembl_gtf_parser.m

Path
D:\MAGE\source\GTF\ensembl_gtf_parser.m
TypeFunction
Last modified03-Feb-2023 08:45:02
Size (bytes)2154

Required Products

ProductImpactedDependency Type
MATLAB
ensembl_gtf_parser
Toolbox

erro

Problems

Impacted Files

FileImpactedRequiredDependency Type
ldclump.m
adjdupP (Line 382)
erro
Function Call
ldclump.m
adjdupP (Line 382)
erro
Function Call

fastWriteTable.m

Path
D:\MAGE\source\fastWriteTable.m
TypeFunction
Last modified08-Aug-2024 14:21:35
Size (bytes)3759

Required Files

FileImpactedRequiredDependency Type
getRandomName.m
fastWriteTable (Line 29)
getRandomName
Function Call
getRandomName.m
fastWriteTable (Line 40)
getRandomName
Function Call
getRandomName.m
fastWriteTable (Line 45)
getRandomName
Function Call
getfilenames.m
fastWriteTable (Line 37)
getfilenames
Function Call
makeWSLpath.m
fastWriteTable (Line 38)
makeWSLpath
Function Call
makeWSLpath.m
fastWriteTable (Line 43)
makeWSLpath
Function Call
makeWSLpath.m
fastWriteTable (Line 44)
makeWSLpath
Function Call
runbash.m
fastWriteTable (Line 40)
runbash
Function Call
runbash.m
fastWriteTable (Line 45)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
fastWriteTable
Toolbox
Parallel Computing Toolbox
fastWriteTable (Line 15)
Function Call
Parallel Computing Toolbox
fastWriteTable (Line 16)
Function Call

fastWriteTable.m

Path
D:\MATLAB.dependencies\MAGE\fastWriteTable.m
TypeFunction
Last modified08-Aug-2024 14:21:35
Size (bytes)3759

Impacted Files

FileImpactedRequiredDependency Type
table2Rdf.m
table2Rdf (Line 44)
fastWriteTable
Function Call
table2Rdf.m
table2Rdf (Line 44)
fastWriteTable
Function Call

Required Files

FileImpactedRequiredDependency Type
getRandomName.m
fastWriteTable (Line 29)
getRandomName
Function Call
getRandomName.m
fastWriteTable (Line 40)
getRandomName
Function Call
getRandomName.m
fastWriteTable (Line 45)
getRandomName
Function Call
getfilenames.m
fastWriteTable (Line 37)
getfilenames
Function Call
makeWSLpath.m
fastWriteTable (Line 38)
makeWSLpath
Function Call
makeWSLpath.m
fastWriteTable (Line 43)
makeWSLpath
Function Call
makeWSLpath.m
fastWriteTable (Line 44)
makeWSLpath
Function Call
runbash.m
fastWriteTable (Line 40)
runbash
Function Call
runbash.m
fastWriteTable (Line 45)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
fastWriteTable
Toolbox
Parallel Computing Toolbox
fastWriteTable (Line 15)
Function Call
Parallel Computing Toolbox
fastWriteTable (Line 16)
Function Call

fast_match_bracket.m

Path
D:\MAGE\dependencies\JSONLab\fast_match_bracket.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)2693

Required Products

ProductImpactedDependency Type
MATLAB
fast_match_bracket
Toolbox

fast_match_bracket.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\fast_match_bracket.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)2693

Impacted Files

FileImpactedRequiredDependency Type
loadjson.m
parse_array (Line 188)
fast_match_bracket
Function Call
loadjson.m
parse_array (Line 188)
fast_match_bracket
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
fast_match_bracket
Toolbox

fetchHPA.m

Path
D:\MAGE\source\fetchHPA.m
TypeFunction
Last modified24-Jan-2024 17:27:29
Size (bytes)3017

Required Files

FileImpactedRequiredDependency Type
fetchHPA.m
fetchHPA (Line 10)
fetchHPA
Function Argument
progressGen.m
fetchHPA (Line 49)
progressGen
Function Call
progressGen.m
fetchHPA (Line 70)
progressGen
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
fetchHPA
Toolbox

fetchHPA.m

Path
D:\MATLAB.dependencies\MAGE\fetchHPA.m
TypeFunction
Last modified24-Jan-2024 17:27:29
Size (bytes)3017

Impacted Files

FileImpactedRequiredDependency Type
fetchHPA.m
fetchHPA (Line 10)
fetchHPA
Function Argument
fetchHPA.m
fetchHPA (Line 10)
fetchHPA
Function Argument

Required Files

FileImpactedRequiredDependency Type
fetchHPA.m
fetchHPA (Line 10)
fetchHPA
Function Argument
progressGen.m
fetchHPA (Line 49)
progressGen
Function Call
progressGen.m
fetchHPA (Line 70)
progressGen
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
fetchHPA
Toolbox

fetchReplicationGWAS.m

Path
D:\MAGE\source\fetchReplicationGWAS.m
TypeFunction
Last modified15-Aug-2023 09:55:37
Size (bytes)5652

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
fetchReplicationGWAS (Line 55)
bfilereader
Function Call
bfilereader.m
fetchReplicationGWAS (Line 67)
bfilereader
Function Call
bfilereader.m
fetchReplicationGWAS (Line 82)
bfilereader
Function Call
bfilereader.m
fetchReplicationGWAS (Line 95)
bfilereader
Function Call
bgireader.m
fetchReplicationGWAS (Line 16)
bgireader
Function Call
colnames.m
fetchReplicationGWAS (Line 118)
colnames
Function Call
colnames.m
fetchReplicationGWAS (Line 122)
colnames
Function Call
colnames.m
fetchReplicationGWAS (Line 139)
colnames
Function Call
colnames.m
fetchReplicationGWAS (Line 149)
colnames
Function Call
colnames.m
fetchReplicationGWAS (Line 150)
colnames
Function Call
colnames.m
fetchReplicationGWAS (Line 153)
colnames
Function Call
createGWASheader.m
fetchReplicationGWAS (Line 115)
createGWASheader
Function Call
liftover.m
fetchReplicationGWAS (Line 30)
liftover
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
fetchReplicationGWAS
Toolbox

fig2tile.m

Path
D:\MAGE\source\fig2tile.m
TypeFunction
Last modified22-Feb-2023 12:20:26
Size (bytes)4415

Required Products

ProductImpactedDependency Type
Global Optimization Toolbox
optimizeGrids (Line 107)
Function Call
MATLAB
fig2tile
Toolbox
Optimization Toolbox
optimizeGrids (Line 101)
Function Call

fileparts2.m

Path
D:\MAGE\source\fileparts2.m
TypeFunction
Last modified23-May-2025 12:07:26
Size (bytes)397

Required Products

ProductImpactedDependency Type
MATLAB
fileparts2
Toolbox

fileparts2.m

Path
D:\MATLAB.dependencies\MAGE\fileparts2.m
TypeFunction
Last modified23-May-2025 12:07:26
Size (bytes)397

Impacted Files

FileImpactedRequiredDependency Type
gwasrunner.m
call_regenie_in (Line 2703)
fileparts2
Function Call
gwasrunner.m
call_regenie_in (Line 2703)
fileparts2
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
fileparts2
Toolbox

filterFileRows.m

Path
D:\MAGE\source\filterFileRows.m
TypeFunction
Last modified25-Apr-2025 15:04:28
Size (bytes)10973

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
filterFileRows (Line 35)
bfilereader
Function Call
getRandomName.m
filterFileRows (Line 21)
getRandomName
Function Call
makeWSLpath.m
filterFileRows (Line 46)
makeWSLpath
Function Call
runbash.m
filterFileRows (Line 170)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
filterFileRows
Toolbox

filterFileRows.m

Path
D:\MATLAB.dependencies\MAGE\filterFileRows.m
TypeFunction
Last modified25-Apr-2025 15:04:28
Size (bytes)10973

Impacted Files

FileImpactedRequiredDependency Type
MRlap.m
MRlap (Line 153)
filterFileRows
Function Call
bimreader.m
bimreader (Line 26)
filterFileRows
Function Call
bimreader.m
bimreader (Line 26)
filterFileRows
Function Call

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
filterFileRows (Line 35)
bfilereader
Function Call
getRandomName.m
filterFileRows (Line 21)
getRandomName
Function Call
makeWSLpath.m
filterFileRows (Line 46)
makeWSLpath
Function Call
runbash.m
filterFileRows (Line 170)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
filterFileRows
Toolbox

filterline.m

Path
D:\MAGE\dependencies\filterline\filterline.m
TypeFunction
Last modified12-Jan-2025 14:53:05
Size (bytes)1725

Required Files

FileImpactedRequiredDependency Type
filterline.m
filterline (Line 13)
filterline
Function Argument
makeWSLpath.m
filterline (Line 15)
makeWSLpath
Function Call
makeWSLpath.m
filterline (Line 40)
makeWSLpath
Function Call
makeWSLpath.m
filterline (Line 41)
makeWSLpath
Function Call
makeWSLpath.m
filterline (Line 42)
makeWSLpath
Function Call
runbash.m
filterline (Line 53)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
filterline
Toolbox

filterline.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\filterline\filterline.m
TypeFunction
Last modified12-Jan-2025 14:53:05
Size (bytes)1725

Impacted Files

FileImpactedRequiredDependency Type
filterline.m
filterline (Line 13)
filterline
Function Argument
filterline.m
filterline (Line 13)
filterline
Function Argument

Required Files

FileImpactedRequiredDependency Type
filterline.m
filterline (Line 13)
filterline
Function Argument
makeWSLpath.m
filterline (Line 15)
makeWSLpath
Function Call
makeWSLpath.m
filterline (Line 40)
makeWSLpath
Function Call
makeWSLpath.m
filterline (Line 41)
makeWSLpath
Function Call
makeWSLpath.m
filterline (Line 42)
makeWSLpath
Function Call
runbash.m
filterline (Line 53)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
filterline
Toolbox

fitSurvCox.m

Path
D:\MAGE\source\fitSurvCox.m
TypeFunction
Last modified19-Apr-2025 17:38:40
Size (bytes)36300

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
fitSurvCox (Line 645)
MATLAB2Rconnector
Function Call
addRfont.m
fitSurvCox (Line 644)
addRfont
Function Call
colnames.m
fitSurvCox (Line 356)
colnames
Function Call
colnames.m
fitSurvCox (Line 657)
colnames
Function Call
colnames.m
fitSurvCox (Line 695)
colnames
Function Call
colnames.m
fitSurvCox (Line 720)
colnames
Function Call
createRvec.m
fitSurvCox (Line 451)
createRvec
Function Call
getRandomName.m
fitSurvCox (Line 640)
getRandomName
Function Call
table2Rdf.m
fitSurvCox (Line 369)
table2Rdf
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
fitSurvCox
Toolbox

fitSurvCox.m

Path
D:\MATLAB.dependencies\MAGE\fitSurvCox.m
TypeFunction
Last modified19-Apr-2025 17:38:40
Size (bytes)36300

Impacted Files

FileImpactedRequiredDependency Type
gwasrunner.m
runModels (Line 1876)
fitSurvCox
Function Call
gwasrunner.m
runModels (Line 1876)
fitSurvCox
Function Call

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
fitSurvCox (Line 645)
MATLAB2Rconnector
Function Call
addRfont.m
fitSurvCox (Line 644)
addRfont
Function Call
colnames.m
fitSurvCox (Line 356)
colnames
Function Call
colnames.m
fitSurvCox (Line 657)
colnames
Function Call
colnames.m
fitSurvCox (Line 695)
colnames
Function Call
colnames.m
fitSurvCox (Line 720)
colnames
Function Call
createRvec.m
fitSurvCox (Line 451)
createRvec
Function Call
getRandomName.m
fitSurvCox (Line 640)
getRandomName
Function Call
table2Rdf.m
fitSurvCox (Line 369)
table2Rdf
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
fitSurvCox
Toolbox

flashpca.m

Path
D:\MAGE\dependencies\flashpca\flashpca.m
TypeFunction
Last modified14-Nov-2024 15:18:51
Size (bytes)474

Required Files

FileImpactedRequiredDependency Type
flashpca.m
flashpca (Line 10)
flashpca
Function Argument
makeWSLpath.m
flashpca (Line 13)
makeWSLpath
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
flashpca
Toolbox

flashpca.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\flashpca\flashpca.m
TypeFunction
Last modified14-Nov-2024 15:18:51
Size (bytes)474

Impacted Files

FileImpactedRequiredDependency Type
flashpca.m
flashpca (Line 10)
flashpca
Function Argument
flashpca.m
flashpca (Line 10)
flashpca
Function Argument

Required Files

FileImpactedRequiredDependency Type
flashpca.m
flashpca (Line 10)
flashpca
Function Argument
makeWSLpath.m
flashpca (Line 13)
makeWSLpath
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
flashpca
Toolbox

forest.m

Path
D:\MAGE\dependencies\Rwrappers\forest.m
TypeFunction
Last modified27-Oct-2022 12:59:34
Size (bytes)20018

Required Products

ProductImpactedDependency Type
MATLAB
forest
Toolbox

forest.m

Path
D:\MATLAB.dependencies\MAGE\Rwrappers\forest.m
TypeFunction
Last modified27-Oct-2022 12:59:34
Size (bytes)20018

Impacted Files

FileImpactedRequiredDependency Type
meta_analysis.m
meta_analysis (Line 166)
forest
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
forest
Toolbox

gcorrplot.m

Path
D:\MAGE\dependencies\ldsc\gcorrplot.m
TypeFunction
Last modified31-Jul-2023 13:52:20
Size (bytes)8801

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
gcorrplot (Line 206)
MATLAB2Rconnector
Function Call
addRfont.m
gcorrplot (Line 205)
addRfont
Function Call
colnames.m
gcorrplot (Line 61)
colnames
Function Call
rgb2hex.m
gcorrplot (Line 82)
rgb2hex
Function Call

Required Products

ProductImpactedDependency Type
Bioinformatics Toolbox
gcorrplot (Line 57)
Function Call
MATLAB
gcorrplot
Toolbox

gcta.m

Path
D:\MAGE\dependencies\GCTA\gcta.m
TypeFunction
Last modified15-Jan-2025 16:19:13
Size (bytes)15810

Required Files

FileImpactedRequiredDependency Type
dos2unix.m
gcta (Line 131)
dos2unix
Function Call
dos2unix.m
gcta (Line 136)
dos2unix
Function Call
gcta.m
gcta (Line 22)
gcta
Function Argument
getRandomName.m
gcta (Line 92)
getRandomName
Function Call
getfilenames.m
gcta (Line 216)
getfilenames
Function Call
getfilenames.m
gcta (Line 43)
getfilenames
Function Call
getfilenames.m
gcta (Line 47)
getfilenames
Function Call
makeWSLpath.m
gcta (Line 142)
makeWSLpath
Function Call
makeWSLpath.m
gcta (Line 143)
makeWSLpath
Function Call
makeWSLpath.m
gcta (Line 163)
makeWSLpath
Function Call
makeWSLpath.m
gcta (Line 194)
makeWSLpath
Function Call
makeWSLpath.m
gcta (Line 197)
makeWSLpath
Function Call
readGWASfile.m
gcta (Line 78)
readGWASfile
Function Call
snptag.m
gcta (Line 105)
snptag
Function Call
strshare.m
gcta (Line 65)
strshare
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
gcta
Toolbox
Parallel Computing Toolbox
gcta (Line 129)
Toolbox
Parallel Computing Toolbox
gcta (Line 165)
Toolbox
Parallel Computing Toolbox
gcta (Line 31)
Function Call
Parallel Computing Toolbox
gcta (Line 37)
Function Call
Parallel Computing Toolbox
gcta (Line 39)
Function Call

gcta.m

Path
D:\MATLAB.dependencies\MAGE\GCTA\gcta.m
TypeFunction
Last modified15-Jan-2025 16:19:13
Size (bytes)15810

Impacted Files

FileImpactedRequiredDependency Type
gcta.m
gcta (Line 22)
gcta
Function Argument
gcta.m
gcta (Line 22)
gcta
Function Argument

Required Files

FileImpactedRequiredDependency Type
dos2unix.m
gcta (Line 131)
dos2unix
Function Call
dos2unix.m
gcta (Line 136)
dos2unix
Function Call
gcta.m
gcta (Line 22)
gcta
Function Argument
getRandomName.m
gcta (Line 92)
getRandomName
Function Call
getfilenames.m
gcta (Line 216)
getfilenames
Function Call
getfilenames.m
gcta (Line 43)
getfilenames
Function Call
getfilenames.m
gcta (Line 47)
getfilenames
Function Call
makeWSLpath.m
gcta (Line 142)
makeWSLpath
Function Call
makeWSLpath.m
gcta (Line 143)
makeWSLpath
Function Call
makeWSLpath.m
gcta (Line 163)
makeWSLpath
Function Call
makeWSLpath.m
gcta (Line 194)
makeWSLpath
Function Call
makeWSLpath.m
gcta (Line 197)
makeWSLpath
Function Call
readGWASfile.m
gcta (Line 78)
readGWASfile
Function Call
snptag.m
gcta (Line 105)
snptag
Function Call
strshare.m
gcta (Line 65)
strshare
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
gcta
Toolbox
Parallel Computing Toolbox
gcta (Line 129)
Toolbox
Parallel Computing Toolbox
gcta (Line 165)
Toolbox
Parallel Computing Toolbox
gcta (Line 31)
Function Call
Parallel Computing Toolbox
gcta (Line 37)
Function Call
Parallel Computing Toolbox
gcta (Line 39)
Function Call

genePlotter.m

Path
D:\MAGE\source\genePlotter.m
TypeFunction
Last modified21-Apr-2025 12:25:52
Size (bytes)35007

Required Files

FileImpactedRequiredDependency Type
LDlink.m
genePlotter (Line 174)
LDlink
Function Call
colnames.m
genePlotter (Line 176)
colnames
Function Call
duplicates.m
genePlotter (Line 304)
duplicates
Function Call
getInsampleLD.m
genePlotter (Line 190)
getInsampleLD
Function Call
getInsampleLD.m
genePlotter (Line 195)
getInsampleLD
Function Call
getQCEID.m
genePlotter (Line 179)
getQCEID
Function Call
getRandomName.m
genePlotter (Line 795)
getRandomName
Function Call
get_colormap.m
genePlotter (Line 568)
get_colormap
Function Call
gnomad.m
genePlotter (Line 252)
gnomad
Function Call
gnomad.m
genePlotter (Line 256)
gnomad
Function Call
gnomad.m
genePlotter (Line 263)
gnomad
Function Call
gnomad.m
genePlotter (Line 283)
gnomad
Function Call
gnomad.m
genePlotter (Line 311)
gnomad
Function Call
palette.m
genePlotter (Line 431)
palette
Function Call

Required Products

ProductImpactedDependency Type
Bioinformatics Toolbox
genePlotter (Line 706)
Function Call
MATLAB
genePlotter
Toolbox
Statistics and Machine Learning Toolbox
genePlotter (Line 181)
Function Call
Statistics and Machine Learning Toolbox
genePlotter (Line 404)
Function Call

genePlotter.m

Path
D:\MATLAB.dependencies\MAGE\genePlotter.m
TypeFunction
Last modified21-Apr-2025 12:25:52
Size (bytes)35007

Impacted Files

FileImpactedRequiredDependency Type
gwasCaller.m
call_genePlotter (Line 524)
genePlotter
Function Call
regionalPlotter.m
regionalPlotter (Line 212)
genePlotter
Function Call
ribocure.m
call_genePlotter (Line 540)
genePlotter
Function Call

Required Files

FileImpactedRequiredDependency Type
LDlink.m
genePlotter (Line 174)
LDlink
Function Call
colnames.m
genePlotter (Line 176)
colnames
Function Call
duplicates.m
genePlotter (Line 304)
duplicates
Function Call
getInsampleLD.m
genePlotter (Line 190)
getInsampleLD
Function Call
getInsampleLD.m
genePlotter (Line 195)
getInsampleLD
Function Call
getQCEID.m
genePlotter (Line 179)
getQCEID
Function Call
getRandomName.m
genePlotter (Line 795)
getRandomName
Function Call
get_colormap.m
genePlotter (Line 568)
get_colormap
Function Call
gnomad.m
genePlotter (Line 252)
gnomad
Function Call
gnomad.m
genePlotter (Line 256)
gnomad
Function Call
gnomad.m
genePlotter (Line 263)
gnomad
Function Call
gnomad.m
genePlotter (Line 283)
gnomad
Function Call
gnomad.m
genePlotter (Line 311)
gnomad
Function Call
palette.m
genePlotter (Line 431)
palette
Function Call

Required Products

ProductImpactedDependency Type
Bioinformatics Toolbox
genePlotter (Line 706)
Function Call
MATLAB
genePlotter
Toolbox
Statistics and Machine Learning Toolbox
genePlotter (Line 181)
Function Call
Statistics and Machine Learning Toolbox
genePlotter (Line 404)
Function Call

GeneTestPlotter.m

Path
D:\MAGE\source\GeneTestPlotter.m
TypeFunction
Last modified03-Sep-2024 14:16:56
Size (bytes)16288

Required Files

FileImpactedRequiredDependency Type
colnames.m
drawPerPheno (Line 121)
colnames
Function Call
colnames.m
drawPerPheno (Line 77)
colnames
Function Call
shade.m
drawPerPheno (Line 300)
shade
Function Call
tmp2
applyMultiTest (Line 417)
tmp2
Function Call

Required Products

ProductImpactedDependency Type
Bioinformatics Toolbox
applyMultiTest (Line 421)
Function Call
MATLAB
GeneTestPlotter
Toolbox

geneWrapper.m

Path
D:\MAGE\dependencies\REGENIE\geneWrapper.m
TypeFunction
Last modified30-May-2025 16:03:45
Size (bytes)50119

Required Files

FileImpactedRequiredDependency Type
EnsemblREST.m
innerWrapperSingle (Line 533)
EnsemblREST
Function Call
EnsemblREST.m
innerWrapperSingle (Line 561)
EnsemblREST
Function Call
EnsemblREST.m
innerWrapperSingle (Line 658)
EnsemblREST
Function Call
bfilereader.m
parseWESqc (Line 1010)
bfilereader
Function Call
bfilereader.m
parseWESqc (Line 1049)
bfilereader
Function Call
bfilereader.m
parseWESqc (Line 1056)
bfilereader
Function Call
bfilereader.m
parseWESqc (Line 1071)
bfilereader
Function Call
bfilereader.m
parseWESqc (Line 1093)
bfilereader
Function Call
bfilereader.m
parseWESqc (Line 1103)
bfilereader
Function Call
bfilereader.m
innerWrapperSingle (Line 317)
bfilereader
Function Call
bfilereader.m
innerWrapperSingle (Line 372)
bfilereader
Function Call
callVEP.m
innerWrapperSingle (Line 353)
callVEP
Function Call
callVEP.m
parseAnnotatedCategories (Line 845)
callVEP
Function Call
callVEP.m
parseAnnotatedCategories (Line 943)
callVEP
Function Call
colnames.m
parseAnnotatedCategories (Line 811)
colnames
Function Call
duplicates.m
parseAnnotatedCategories (Line 833)
duplicates
Function Call
geneWrapper.m
geneWrapper (Line 133)
geneWrapper
Function Argument
getfilenames.m
parseWESqc (Line 993)
getfilenames
Function Call
natsort.m
parseWESqc (Line 1119)
natsort
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
geneWrapper
Toolbox

geneWrapper.m

Path
D:\MATLAB.dependencies\MAGE\REGENIE\geneWrapper.m
TypeFunction
Last modified07-Apr-2025 14:11:04
Size (bytes)54663

Impacted Files

FileImpactedRequiredDependency Type
call_geneWrapper.m
call_geneWrapper (Line 47)
geneWrapper
Function Call
call_geneWrapper.m
call_geneWrapper (Line 47)
geneWrapper
Function Call
geneWrapper.m
geneWrapper (Line 133)
geneWrapper
Function Argument
geneWrapper.m
geneWrapper (Line 133)
geneWrapper
Function Argument

Required Files

FileImpactedRequiredDependency Type
EnsemblREST.m
innerWrapperSingle (Line 533)
EnsemblREST
Function Call
EnsemblREST.m
innerWrapperSingle (Line 561)
EnsemblREST
Function Call
EnsemblREST.m
innerWrapperSingle (Line 658)
EnsemblREST
Function Call
bfilereader.m
parseWESqc (Line 1010)
bfilereader
Function Call
bfilereader.m
parseWESqc (Line 1049)
bfilereader
Function Call
bfilereader.m
parseWESqc (Line 1056)
bfilereader
Function Call
bfilereader.m
parseWESqc (Line 1077)
bfilereader
Function Call
bfilereader.m
parseWESqc (Line 1102)
bfilereader
Function Call
bfilereader.m
parseWESqc (Line 1115)
bfilereader
Function Call
bfilereader.m
innerWrapperSingle (Line 317)
bfilereader
Function Call
bfilereader.m
innerWrapperSingle (Line 372)
bfilereader
Function Call
callVEP.m
innerWrapperSingle (Line 353)
callVEP
Function Call
callVEP.m
parseAnnotatedCategories (Line 845)
callVEP
Function Call
callVEP.m
parseAnnotatedCategories (Line 943)
callVEP
Function Call
colnames.m
parseAnnotatedCategories (Line 811)
colnames
Function Call
duplicates.m
parseAnnotatedCategories (Line 833)
duplicates
Function Call
geneWrapper.m
geneWrapper (Line 133)
geneWrapper
Function Argument
getfilenames.m
parseWESqc (Line 993)
getfilenames
Function Call
natsort.m
parseWESqc (Line 1134)
natsort
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
geneWrapper
Toolbox

GENE_IDs.txt

Problems

Impacted Files

FileImpactedRequiredDependency Type
biomaRt.m
biomaRt (Line 41)
GENE_IDs
Function Argument

genoimpute.m

Path
D:\MAGE\source\genoimpute.m
TypeFunction
Last modified15-Oct-2024 11:21:20
Size (bytes)3065

Required Products

ProductImpactedDependency Type
MATLAB
genoimpute
Toolbox
Statistics and Machine Learning Toolbox
genoimpute (Line 74)
Function Call

getAdjustedResponseInner.m

Path
D:\MATLAB.dependencies\MAGE\getAdjustedResponseInner.m
TypeFunction
Last modified07-Jul-2022 12:43:30
Size (bytes)5669

Impacted Files

FileImpactedRequiredDependency Type
getAdjustedResponseInner.p
getAdjustedResponseInner
getAdjustedResponseInner
P Code
interactionPlotter.m
InteractionPredictions (Line 413)
getAdjustedResponseInner
Function Call
interactionPlotter.m
InteractionPredictions (Line 431)
getAdjustedResponseInner
Function Call

Required Files

FileImpactedRequiredDependency Type
getTermInfo
getAdjustedResponseInner (Line 10)
getTermInfo
Function Call
identifyVar
getAdjustedResponseInner (Line 15)
identifyVar
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getAdjustedResponseInner
Toolbox
Statistics and Machine Learning Toolbox
reduceterm (Line 105)
Function Call
Statistics and Machine Learning Toolbox
gettermmean (Line 144)
Function Call

getAdjustedResponseInner.p

Path
D:\MAGE\source\getAdjustedResponseInner.p
TypeP-code
Last modified30-May-2025 17:21:48
Size (bytes)1143

Required Files

FileImpactedRequiredDependency Type
getAdjustedResponseInner.m
getAdjustedResponseInner
getAdjustedResponseInner
P Code

Required Products

ProductImpactedDependency Type
MATLAB
getAdjustedResponseInner
Toolbox

getbulkgeno.m

Path
D:\MAGE\source\getbulkgeno.m
TypeFunction
Last modified30-May-2025 17:22:08
Size (bytes)18443

Required Files

FileImpactedRequiredDependency Type
bgenheader.m
getbulkgeno (Line 145)
bgenheader
Function Call
bgenreader.m
getgeno (Line 401)
bgenreader
Function Call
bgenreader.m
getgeno (Line 406)
bgenreader
Function Call
duplicates.m
getbulkgeno (Line 360)
duplicates
Function Call
getfilenames.m
getbulkgeno (Line 101)
getfilenames
Function Call
getfilenames.m
getbulkgeno (Line 102)
getfilenames
Function Call
natsort.m
getbulkgeno (Line 83)
natsort
Function Call
natsort.m
getbulkgeno (Line 97)
natsort
Function Call
strshare.m
getbulkgeno (Line 115)
strshare
Function Call
strshare.m
getbulkgeno (Line 117)
strshare
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getbulkgeno
Toolbox
Parallel Computing Toolbox
getbulkgeno (Line 214)
Function Call
Parallel Computing Toolbox
getbulkgeno (Line 216)
Function Call
Parallel Computing Toolbox
getbulkgeno (Line 224)
Toolbox

getbulkgeno.m

Path
D:\MATLAB.dependencies\MAGE\getbulkgeno.m
TypeFunction
Last modified22-Apr-2024 18:23:07
Size (bytes)18458

Impacted Files

FileImpactedRequiredDependency Type
bgireader.m
bgireader (Line 18)
getbulkgeno
Function Call
bgireader.m
bgireader (Line 18)
getbulkgeno
Function Call
coloc.m
getLDmat (Line 866)
getbulkgeno
Function Call
getInsampleLD.m
getInsampleLD (Line 63)
getbulkgeno
Function Call
getInsampleLD.m
getInsampleLD (Line 67)
getbulkgeno
Function Call
getInsampleLD.m
getInsampleLD (Line 63)
getbulkgeno
Function Call
getInsampleLD.m
getInsampleLD (Line 67)
getbulkgeno
Function Call
getPRS.m
getPRS (Line 42)
getbulkgeno
Function Call
getPhenoCov.m
getPhenoCov (Line 216)
getbulkgeno
Function Call
getPhenoCov.m
getPhenoCov (Line 220)
getbulkgeno
Function Call
gwasrunner.m
gwasrunner (Line 690)
getbulkgeno
Function Call
gwasrunner.m
gwasrunner (Line 710)
getbulkgeno
Function Call
gwasrunner.m
gwasrunner (Line 690)
getbulkgeno
Function Call
gwasrunner.m
gwasrunner (Line 710)
getbulkgeno
Function Call
ldclumpOnline.m
ldclumpOnline (Line 105)
getbulkgeno
Function Call
ldclumpOnline.m
ldclumpOnline (Line 109)
getbulkgeno
Function Call

Required Files

FileImpactedRequiredDependency Type
bgenheader.m
getbulkgeno (Line 145)
bgenheader
Function Call
bgenreader.m
getgeno (Line 401)
bgenreader
Function Call
bgenreader.m
getgeno (Line 406)
bgenreader
Function Call
duplicates.m
getbulkgeno (Line 360)
duplicates
Function Call
getfilenames.m
getbulkgeno (Line 101)
getfilenames
Function Call
getfilenames.m
getbulkgeno (Line 102)
getfilenames
Function Call
natsort.m
getbulkgeno (Line 83)
natsort
Function Call
natsort.m
getbulkgeno (Line 97)
natsort
Function Call
strshare.m
getbulkgeno (Line 115)
strshare
Function Call
strshare.m
getbulkgeno (Line 117)
strshare
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getbulkgeno
Toolbox
Parallel Computing Toolbox
getbulkgeno (Line 214)
Function Call
Parallel Computing Toolbox
getbulkgeno (Line 216)
Function Call
Parallel Computing Toolbox
getbulkgeno (Line 224)
Toolbox

getCI.m

Path
D:\MAGE\source\getCI.m
TypeFunction
Last modified12-Oct-2024 14:16:19
Size (bytes)2488

Required Files

FileImpactedRequiredDependency Type
colnames.m
getCI (Line 44)
colnames
Function Call
colnames.m
getCI (Line 49)
colnames
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getCI
Toolbox
Statistics and Machine Learning Toolbox
getCI (Line 51)
Function Call

getCI.m

Path
D:\MATLAB.dependencies\MAGE\getCI.m
TypeFunction
Last modified12-Oct-2024 14:16:19
Size (bytes)2488

Impacted Files

FileImpactedRequiredDependency Type
effPlotter.m
effPlotter (Line 380)
getCI
Function Call
rarePlotter.m
rarePlotter (Line 119)
getCI
Function Call
rarePlotter.m
rarePlotter (Line 119)
getCI
Function Call

Required Files

FileImpactedRequiredDependency Type
colnames.m
getCI (Line 44)
colnames
Function Call
colnames.m
getCI (Line 49)
colnames
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getCI
Toolbox
Statistics and Machine Learning Toolbox
getCI (Line 51)
Function Call

getfilenames.m

Path
D:\MAGE\source\getfilenames.m
TypeFunction
Last modified14-Nov-2022 11:04:22
Size (bytes)1786

Required Files

FileImpactedRequiredDependency Type
natsort.m
getfilenames (Line 38)
natsort
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getfilenames
Toolbox

getfilenames.m

Path
D:\MATLAB.dependencies\MAGE\getfilenames.m
TypeFunction
Last modified14-Nov-2022 11:04:22
Size (bytes)1786

Impacted Files

FileImpactedRequiredDependency Type
SBayesRC.m
SBayesRC (Line 135)
getfilenames
Function Call
SBayesRC.m
SBayesRC (Line 135)
getfilenames
Function Call
bcftools.m
bcftools (Line 9)
getfilenames
Function Call
callVEP.m
getdbNSFP (Line 709)
getfilenames
Function Call
callVEP.m
getdbNSFP (Line 709)
getfilenames
Function Call
call_geneWrapper.m
call_geneWrapper (Line 25)
getfilenames
Function Call
call_geneWrapper.m
call_geneWrapper (Line 25)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 143)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 179)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 182)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 191)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 194)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 534)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 535)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 557)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 573)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 143)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 179)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 182)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 191)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 194)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 542)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 543)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 565)
getfilenames
Function Call
call_regenie.m
call_regenie (Line 581)
getfilenames
Function Call
coloc.m
fetchEgeneFiles (Line 1086)
getfilenames
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 427)
getfilenames
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 440)
getfilenames
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 427)
getfilenames
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 440)
getfilenames
Function Call
fastWriteTable.m
fastWriteTable (Line 37)
getfilenames
Function Call
fastWriteTable.m
fastWriteTable (Line 37)
getfilenames
Function Call
gcta.m
gcta (Line 216)
getfilenames
Function Call
gcta.m
gcta (Line 43)
getfilenames
Function Call
gcta.m
gcta (Line 47)
getfilenames
Function Call
gcta.m
gcta (Line 216)
getfilenames
Function Call
gcta.m
gcta (Line 43)
getfilenames
Function Call
gcta.m
gcta (Line 47)
getfilenames
Function Call
geneWrapper.m
parseWESqc (Line 993)
getfilenames
Function Call
geneWrapper.m
parseWESqc (Line 993)
getfilenames
Function Call
getUKBdictionary.m
getUKBdictionary (Line 61)
getfilenames
Function Call
getUKBdictionary.m
getUKBdictionary (Line 69)
getfilenames
Function Call
getUKBdictionary.m
getUKBdictionary (Line 61)
getfilenames
Function Call
getUKBdictionary.m
getUKBdictionary (Line 69)
getfilenames
Function Call
getWES.m
getWESsingle (Line 561)
getfilenames
Function Call
getWES.m
readAnnoSetFiles (Line 937)
getfilenames
Function Call
getWES.m
readAnnoSetFiles (Line 939)
getfilenames
Function Call
getWES.m
readAnnoSetFiles (Line 941)
getfilenames
Function Call
getWES.m
getWESsingle (Line 602)
getfilenames
Function Call
getWES.m
readAnnoSetFiles (Line 978)
getfilenames
Function Call
getWES.m
readAnnoSetFiles (Line 980)
getfilenames
Function Call
getWES.m
readAnnoSetFiles (Line 982)
getfilenames
Function Call
getbulkgeno.m
getbulkgeno (Line 101)
getfilenames
Function Call
getbulkgeno.m
getbulkgeno (Line 102)
getfilenames
Function Call
getbulkgeno.m
getbulkgeno (Line 101)
getfilenames
Function Call
getbulkgeno.m
getbulkgeno (Line 102)
getfilenames
Function Call
gwasCaller.m
makeReport (Line 1000)
getfilenames
Function Call
gwasCaller.m
mergeDifferentGSSFolders (Line 1062)
getfilenames
Function Call
gwasCaller.m
mergeDifferentGSSFolders (Line 1065)
getfilenames
Function Call
gwasCaller.m
runPheWas (Line 427)
getfilenames
Function Call
gwasCaller.m
runPheWas (Line 450)
getfilenames
Function Call
gwasCaller.m
gene_based_tests (Line 592)
getfilenames
Function Call
gwasCaller.m
gene_based_tests (Line 733)
getfilenames
Function Call
gwasCaller.m
makeReport (Line 858)
getfilenames
Function Call
gwasCaller.m
makeReport (Line 899)
getfilenames
Function Call
gwasrunner.m
call_regenie_in (Line 2617)
getfilenames
Function Call
gwasrunner.m
call_regenie_in (Line 2695)
getfilenames
Function Call
gwasrunner.m
call_regenie_in (Line 2697)
getfilenames
Function Call
gwasrunner.m
call_regenie_in (Line 2617)
getfilenames
Function Call
gwasrunner.m
call_regenie_in (Line 2695)
getfilenames
Function Call
gwasrunner.m
call_regenie_in (Line 2697)
getfilenames
Function Call
liftover.m
liftover (Line 41)
getfilenames
Function Call
liftover.m
liftover (Line 41)
getfilenames
Function Call
manplotter.m
manplotter (Line 142)
getfilenames
Function Call
manplotter.m
manplotter (Line 144)
getfilenames
Function Call
polyfun.m
compPrior (Line 213)
getfilenames
Function Call
polyfun.m
compPrior (Line 253)
getfilenames
Function Call
polyfun.m
finemapper (Line 444)
getfilenames
Function Call
polyfun.m
prunesumstat (Line 657)
getfilenames
Function Call
polyfun.m
polyfun (Line 85)
getfilenames
Function Call
polyfun.m
polyfun (Line 88)
getfilenames
Function Call
polyfun.m
compPrior (Line 213)
getfilenames
Function Call
polyfun.m
compPrior (Line 253)
getfilenames
Function Call
polyfun.m
finemapper (Line 444)
getfilenames
Function Call
polyfun.m
prunesumstat (Line 657)
getfilenames
Function Call
polyfun.m
polyfun (Line 85)
getfilenames
Function Call
polyfun.m
polyfun (Line 88)
getfilenames
Function Call
pops.m
pops (Line 26)
getfilenames
Function Call
pops.m
pops (Line 26)
getfilenames
Function Call
qctool.m
qctool (Line 9)
getfilenames
Function Call
qctool.m
qctool (Line 9)
getfilenames
Function Call
readvcf.m
readvcf (Line 22)
getfilenames
Function Call
readvcf.m
readvcf (Line 24)
getfilenames
Function Call
ribocure.m
makeReport (Line 1032)
getfilenames
Function Call
ribocure.m
makeReport (Line 1073)
getfilenames
Function Call
ribocure.m
makeReport (Line 1174)
getfilenames
Function Call
ribocure.m
mergeDifferentGSSFolders (Line 1237)
getfilenames
Function Call
ribocure.m
mergeDifferentGSSFolders (Line 1240)
getfilenames
Function Call
ribocure.m
runPheWas (Line 441)
getfilenames
Function Call
ribocure.m
runPheWas (Line 464)
getfilenames
Function Call
ribocure.m
gene_based_tests (Line 608)
getfilenames
Function Call
ribocure.m
gene_based_tests (Line 761)
getfilenames
Function Call

Required Files

FileImpactedRequiredDependency Type
natsort.m
getfilenames (Line 38)
natsort
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getfilenames
Toolbox

getHESIN_DEATH.m

Path
D:\MAGE\UKBB.Toolbox\getHESIN_DEATH.m
TypeFunction
Last modified26-Sep-2024 18:17:02
Size (bytes)27737

Required Files

FileImpactedRequiredDependency Type
colnames.m
getHESIN_DEATH (Line 96)
colnames
Function Call
duplicates.m
getHESIN_DEATH (Line 688)
duplicates
Function Call
phenoParser.m
getHESIN_DEATH (Line 27)
phenoParser
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
getHESIN_DEATH
Toolbox

getHESIN_DEATH.m

Path
D:\MATLAB.dependencies\MAGE\UKBB.Toolbox\getHESIN_DEATH.m
TypeFunction
Last modified26-Sep-2024 18:17:02
Size (bytes)27737

Impacted Files

FileImpactedRequiredDependency Type
phenoParser.m
loadDFfromUKBBasket (Line 1549)
getHESIN_DEATH
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1565)
getHESIN_DEATH
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1570)
getHESIN_DEATH
Function Call
phenoParser.m
getUKBtrait_prop (Line 347)
getHESIN_DEATH
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1549)
getHESIN_DEATH
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1565)
getHESIN_DEATH
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1570)
getHESIN_DEATH
Function Call
phenoParser.m
getUKBtrait_prop (Line 347)
getHESIN_DEATH
Function Call

Required Files

FileImpactedRequiredDependency Type
colnames.m
getHESIN_DEATH (Line 96)
colnames
Function Call
duplicates.m
getHESIN_DEATH (Line 688)
duplicates
Function Call
phenoParser.m
getHESIN_DEATH (Line 27)
phenoParser
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
getHESIN_DEATH
Toolbox

getInsampleLD.m

Path
D:\MAGE\source\getInsampleLD.m
TypeFunction
Last modified18-Nov-2024 15:27:46
Size (bytes)5328

Required Files

FileImpactedRequiredDependency Type
duplicates.m
getInsampleLD (Line 41)
duplicates
Function Call
getQCEID.m
getInsampleLD (Line 49)
getQCEID
Function Call
getbulkgeno.m
getInsampleLD (Line 63)
getbulkgeno
Function Call
getbulkgeno.m
getInsampleLD (Line 67)
getbulkgeno
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getInsampleLD
Toolbox
Statistics and Machine Learning Toolbox
getInsampleLD (Line 140)
Function Call

getInsampleLD.m

Path
D:\MATLAB.dependencies\MAGE\getInsampleLD.m
TypeFunction
Last modified18-Nov-2024 15:27:46
Size (bytes)5328

Impacted Files

FileImpactedRequiredDependency Type
MRlap.m
MRlap (Line 124)
getInsampleLD
Function Call
genePlotter.m
genePlotter (Line 190)
getInsampleLD
Function Call
genePlotter.m
genePlotter (Line 195)
getInsampleLD
Function Call
genePlotter.m
genePlotter (Line 190)
getInsampleLD
Function Call
genePlotter.m
genePlotter (Line 195)
getInsampleLD
Function Call
ldclumpPeaks.m
peakClump (Line 130)
getInsampleLD
Function Call
ldclumpPeaks.m
peakClump (Line 130)
getInsampleLD
Function Call
polyfun.m
fetchLDmat (Line 512)
getInsampleLD
Function Call
polyfun.m
fetchLDmat (Line 512)
getInsampleLD
Function Call

Required Files

FileImpactedRequiredDependency Type
duplicates.m
getInsampleLD (Line 41)
duplicates
Function Call
getQCEID.m
getInsampleLD (Line 49)
getQCEID
Function Call
getbulkgeno.m
getInsampleLD (Line 63)
getbulkgeno
Function Call
getbulkgeno.m
getInsampleLD (Line 67)
getbulkgeno
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getInsampleLD
Toolbox
Statistics and Machine Learning Toolbox
getInsampleLD (Line 140)
Function Call

getMarkerBounds.m

Path
D:\MAGE\source\getMarkerBounds.m
TypeFunction
Last modified26-Feb-2023 14:34:10
Size (bytes)979

Required Products

ProductImpactedDependency Type
MATLAB
getMarkerBounds
Toolbox

getMarkerBounds.m

Path
D:\MATLAB.dependencies\MAGE\getMarkerBounds.m
TypeFunction
Last modified26-Feb-2023 14:34:10
Size (bytes)979

Impacted Files

FileImpactedRequiredDependency Type
effNetPlotter.m
effNetPlotter (Line 301)
getMarkerBounds
Function Call
effNetPlotter.m
effNetPlotter (Line 407)
getMarkerBounds
Function Call
gNetworkPlot.m
gNetworkPlot (Line 210)
getMarkerBounds
Function Call
gNetworkPlot.m
gNetworkPlot (Line 305)
getMarkerBounds
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getMarkerBounds
Toolbox

getnext

Problems

Impacted Files

FileImpactedRequiredDependency Type
vcftrimmer.m
vcftrimmerReducer (Line 255)
getnext
Function Call

getOLINKbatch.m

Path
D:\MAGE\UKBB.Toolbox\getOLINKbatch.m
TypeFunction
Last modified29-Jul-2024 18:18:51
Size (bytes)1311

Required Files

FileImpactedRequiredDependency Type
getOLINKbatch.m
getOLINKbatch (Line 8)
getOLINKbatch
Function Argument
olink_batch_number.dat
getOLINKbatch (Line 17)
olink_batch_number
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
getOLINKbatch
Toolbox

getOLINKbatch.m

Path
D:\MATLAB.dependencies\MAGE\UKBB.Toolbox\getOLINKbatch.m
TypeFunction
Last modified29-Jul-2024 18:18:51
Size (bytes)1311

Impacted Files

FileImpactedRequiredDependency Type
getOLINKbatch.m
getOLINKbatch (Line 8)
getOLINKbatch
Function Argument
getOLINKbatch.m
getOLINKbatch (Line 8)
getOLINKbatch
Function Argument

Required Files

FileImpactedRequiredDependency Type
getOLINKbatch.m
getOLINKbatch (Line 8)
getOLINKbatch
Function Argument
olink_batch_number.dat
getOLINKbatch (Line 17)
olink_batch_number
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
getOLINKbatch
Toolbox

getPheno.m

Path
D:\MAGE\UKBB.Toolbox\getPheno.m
TypeFunction
Last modified05-Jul-2022 17:30:28
Size (bytes)7311

Required Files

FileImpactedRequiredDependency Type
getPheno.m
getPheno (Line 37)
getPheno
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
getPheno
Toolbox

getPheno.m

Path
D:\MATLAB.dependencies\MAGE\UKBB.Toolbox\getPheno.m
TypeFunction
Last modified05-Jul-2022 17:30:28
Size (bytes)7311

Impacted Files

FileImpactedRequiredDependency Type
getPheno.m
getPheno (Line 37)
getPheno
Function Argument
getPheno.m
getPheno (Line 37)
getPheno
Function Argument
getPhenoCov.m
getPhenoCov (Line 124)
getPheno
Function Call
getPhenoCov.m
getPhenoCov (Line 128)
getPheno
Function Call
gwasrunner.m
gwasrunner (Line 985)
getPheno
Function Call
gwasrunner.m
gwasrunner (Line 985)
getPheno
Function Call

Required Files

FileImpactedRequiredDependency Type
getPheno.m
getPheno (Line 37)
getPheno
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
getPheno
Toolbox

getPhenoCov.m

Path
D:\MAGE\UKBB.Toolbox\getPhenoCov.m
TypeFunction
Last modified30-May-2025 17:25:15
Size (bytes)11524

Required Files

FileImpactedRequiredDependency Type
colnames.m
getPhenoCov (Line 89)
colnames
Function Call
getPheno.m
getPhenoCov (Line 124)
getPheno
Function Call
getQCEID.m
getPhenoCov (Line 46)
getQCEID
Function Call
getbulkgeno.m
getPhenoCov (Line 216)
getbulkgeno
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getPhenoCov
Toolbox
Parallel Computing Toolbox
getPhenoCov (Line 215)
Function Call

getPhenoCov.m

Path
D:\MATLAB.dependencies\MAGE\getPhenoCov.m
TypeFunction
Last modified13-Jun-2024 16:48:58
Size (bytes)11765

Impacted Files

FileImpactedRequiredDependency Type
call_regenie.m
call_regenie (Line 241)
getPhenoCov
Function Call
call_regenie.m
call_regenie (Line 241)
getPhenoCov
Function Call
mediate.m
mediate (Line 135)
getPhenoCov
Function Call

Required Files

FileImpactedRequiredDependency Type
colnames.m
getPhenoCov (Line 89)
colnames
Function Call
getPheno.m
getPhenoCov (Line 128)
getPheno
Function Call
getQCEID.m
getPhenoCov (Line 46)
getQCEID
Function Call
getbulkgeno.m
getPhenoCov (Line 220)
getbulkgeno
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getPhenoCov
Toolbox
Parallel Computing Toolbox
getPhenoCov (Line 219)
Function Call

getPRS.m

Path
D:\MAGE\source\getPRS.m
TypeFunction
Last modified30-May-2025 17:28:04
Size (bytes)2996

Required Files

FileImpactedRequiredDependency Type
colnames.m
getPRS (Line 30)
colnames
Function Call
getbulkgeno.m
getPRS (Line 42)
getbulkgeno
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getPRS
Toolbox

getPycmd.m

Path
D:\MAGE\dependencies\pyutils\getPycmd.m
TypeFunction
Last modified16-Jul-2023 11:54:49
Size (bytes)1699

Required Products

ProductImpactedDependency Type
MATLAB
getPycmd
Toolbox

getPycmd.m

Path
D:\MATLAB.dependencies\MAGE\pyutils\getPycmd.m
TypeFunction
Last modified16-Jul-2023 11:54:49
Size (bytes)1699

Impacted Files

FileImpactedRequiredDependency Type
violinPlot.m
violinPlot (Line 105)
getPycmd
Function Call
violinPlot.m
violinPlot (Line 107)
getPycmd
Function Call
violinPlot.m
violinPlot (Line 116)
getPycmd
Function Call
violinPlot.m
violinPlot (Line 132)
getPycmd
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getPycmd
Toolbox

getQCEID.m

Path
D:\MAGE\UKBB.Toolbox\getQCEID.m
TypeFunction
Last modified30-May-2025 16:59:49
Size (bytes)4568

Required Products

ProductImpactedDependency Type
MATLAB
getQCEID
Toolbox

getQCEID.m

Path
D:\MATLAB.dependencies\MAGE\UKBB.Toolbox\getQCEID.m
TypeFunction
Last modified09-Jul-2024 18:18:54
Size (bytes)4388

Impacted Files

FileImpactedRequiredDependency Type
MRlap.m
MRlap (Line 110)
getQCEID
Function Call
coloc.m
coloc (Line 73)
getQCEID
Function Call
genePlotter.m
genePlotter (Line 179)
getQCEID
Function Call
genePlotter.m
genePlotter (Line 179)
getQCEID
Function Call
getInsampleLD.m
getInsampleLD (Line 49)
getQCEID
Function Call
getInsampleLD.m
getInsampleLD (Line 49)
getQCEID
Function Call
getPhenoCov.m
getPhenoCov (Line 46)
getQCEID
Function Call
getPhenoCov.m
getPhenoCov (Line 46)
getQCEID
Function Call
gwasrunner.m
gwasrunner (Line 387)
getQCEID
Function Call
gwasrunner.m
gwasrunner (Line 387)
getQCEID
Function Call
ldclumpOnline.m
ldclumpOnline (Line 71)
getQCEID
Function Call
ldclumpPeaks.m
peakClump (Line 126)
getQCEID
Function Call
ldclumpPeaks.m
peakClump (Line 126)
getQCEID
Function Call
polyfun.m
fetchLDmat (Line 490)
getQCEID
Function Call
polyfun.m
fetchLDmat (Line 490)
getQCEID
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getQCEID
Toolbox

getRandomName.m

Path
D:\MAGE\UKBB.Toolbox\getRandomName.m
TypeFunction
Last modified02-Apr-2020 18:11:43
Size (bytes)163

Required Products

ProductImpactedDependency Type
MATLAB
getRandomName
Toolbox

getRandomName.m

Path
D:\MAGE\source\getRandomName.m
TypeFunction
Last modified31-May-2024 20:00:42
Size (bytes)893

Required Products

ProductImpactedDependency Type
MATLAB
getRandomName
Toolbox

getRandomName.m

Path
D:\MATLAB.dependencies\MAGE\getRandomName.m
TypeFunction
Last modified31-May-2024 20:00:42
Size (bytes)893

Impacted Files

FileImpactedRequiredDependency Type
EnhancedVolcano.m
EnhancedVolcano (Line 42)
getRandomName
Function Call
MRlap.m
MRlap (Line 38)
getRandomName
Function Call
MRrunner.m
MRrunner (Line 154)
getRandomName
Function Call
Rpam.m
Rpam (Line 82)
getRandomName
Function Call
SBayesRC.m
SBayesRC (Line 42)
getRandomName
Function Call
SBayesRC.m
SBayesRC (Line 42)
getRandomName
Function Call
coloc.m
callColoc (Line 736)
getRandomName
Function Call
delongtest.m
delongtest (Line 12)
getRandomName
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 202)
getRandomName
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 204)
getRandomName
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 202)
getRandomName
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 204)
getRandomName
Function Call
effPlotter.m
effPlotter (Line 247)
getRandomName
Function Call
enrichr.m
enrichr (Line 31)
getRandomName
Function Call
enrichr.m
enrichr (Line 31)
getRandomName
Function Call
fastWriteTable.m
fastWriteTable (Line 29)
getRandomName
Function Call
fastWriteTable.m
fastWriteTable (Line 40)
getRandomName
Function Call
fastWriteTable.m
fastWriteTable (Line 45)
getRandomName
Function Call
fastWriteTable.m
fastWriteTable (Line 29)
getRandomName
Function Call
fastWriteTable.m
fastWriteTable (Line 40)
getRandomName
Function Call
fastWriteTable.m
fastWriteTable (Line 45)
getRandomName
Function Call
filterFileRows.m
filterFileRows (Line 21)
getRandomName
Function Call
filterFileRows.m
filterFileRows (Line 21)
getRandomName
Function Call
fitSurvCox.m
fitSurvCox (Line 640)
getRandomName
Function Call
fitSurvCox.m
fitSurvCox (Line 640)
getRandomName
Function Call
gcta.m
gcta (Line 92)
getRandomName
Function Call
gcta.m
gcta (Line 92)
getRandomName
Function Call
genePlotter.m
genePlotter (Line 795)
getRandomName
Function Call
genePlotter.m
genePlotter (Line 795)
getRandomName
Function Call
getWES.m
getWESsingle (Line 529)
getRandomName
Function Call
getWES.m
geneCallMerger (Line 720)
getRandomName
Function Call
getWES.m
readAnnoSetFiles (Line 868)
getRandomName
Function Call
getWES.m
getWESsingle (Line 570)
getRandomName
Function Call
getWES.m
geneCallMerger (Line 761)
getRandomName
Function Call
getWES.m
readAnnoSetFiles (Line 909)
getRandomName
Function Call
ggvenn.m
ggvenn (Line 36)
getRandomName
Function Call
gwasCaller.m
gene_based_tests (Line 627)
getRandomName
Function Call
gwasrunner.m
call_regenie_in (Line 2437)
getRandomName
Function Call
gwasrunner.m
call_regenie_in (Line 2437)
getRandomName
Function Call
ldclump.m
ldclump (Line 54)
getRandomName
Function Call
ldclump.m
ldclump (Line 54)
getRandomName
Function Call
ldsc.m
ldsc (Line 160)
getRandomName
Function Call
ldsc.m
ldsc (Line 246)
getRandomName
Function Call
ldsc.m
munge_sumstats (Line 263)
getRandomName
Function Call
liftover.m
liftover (Line 32)
getRandomName
Function Call
liftover.m
liftover (Line 32)
getRandomName
Function Call
mediate.m
mediate (Line 172)
getRandomName
Function Call
mtag.m
munge_sumstats (Line 136)
getRandomName
Function Call
mtag.m
mtag (Line 79)
getRandomName
Function Call
mtag.m
munge_sumstats (Line 136)
getRandomName
Function Call
mtag.m
mtag (Line 79)
getRandomName
Function Call
padjust.m
padjust (Line 13)
getRandomName
Function Call
padjust.m
padjust (Line 13)
getRandomName
Function Call
pheatmap.m
pheatmap (Line 77)
getRandomName
Function Call
pheatmap.m
pheatmap (Line 77)
getRandomName
Function Call
phenoParser.m
parsePhenoQuery (Line 1231)
getRandomName
Function Call
phenoParser.m
parsePhenoQuery (Line 1231)
getRandomName
Function Call
readvcf.m
readvcf (Line 36)
getRandomName
Function Call
ribocure.m
gene_based_tests (Line 643)
getRandomName
Function Call
run_bNMF.m
run_bNMF (Line 52)
getRandomName
Function Call
run_bNMF.m
run_bNMF (Line 52)
getRandomName
Function Call
ss2fuma.m
ss2fuma (Line 15)
getRandomName
Function Call
ss2fuma.m
ss2fuma (Line 15)
getRandomName
Function Call
tabix.m
tabix (Line 38)
getRandomName
Function Call
tabix.m
tabix (Line 38)
getRandomName
Function Call
table2Rdf.m
table2Rdf (Line 34)
getRandomName
Function Call
table2Rdf.m
table2Rdf (Line 34)
getRandomName
Function Call
textRepel.m
textRepel (Line 26)
getRandomName
Function Call
textRepel.m
textRepel (Line 26)
getRandomName
Function Call
upsetWrapper.m
upsetWrapper (Line 65)
getRandomName
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getRandomName
Toolbox

getrawUKB.m

Path
D:\MAGE\UKBB.Toolbox\getrawUKB.m
TypeFunction
Last modified30-May-2025 17:01:17
Size (bytes)3024

Required Files

FileImpactedRequiredDependency Type
getrawUKB.m
getrawUKB (Line 36)
getrawUKB
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
getrawUKB
Toolbox

getrawUKB.m

Path
D:\MATLAB.dependencies\MAGE\UKBB.Toolbox\getrawUKB.m
TypeFunction
Last modified18-Apr-2022 14:04:37
Size (bytes)2929

Impacted Files

FileImpactedRequiredDependency Type
getrawUKB.m
getrawUKB (Line 36)
getrawUKB
Function Argument
getrawUKB.m
getrawUKB (Line 34)
getrawUKB
Function Argument

Required Files

FileImpactedRequiredDependency Type
getrawUKB.m
getrawUKB (Line 34)
getrawUKB
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
getrawUKB
Toolbox

getRfuncArgs.m

Path
D:\MAGE\dependencies\Rutils\getRfuncArgs.m
TypeFunction
Last modified07-Feb-2023 19:26:30
Size (bytes)1129

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
getRfuncArgs (Line 22)
MATLAB2Rconnector
Function Call
RfncArgs_4matlab.txt
getRfuncArgs (Line 23)
RfncArgs_4matlab
Function Argument
RfncContent_4matlab.txt
getRfuncArgs (Line 33)
RfncContent_4matlab
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
getRfuncArgs
Toolbox

getRfuncArgs.m

Path
D:\MATLAB.dependencies\MAGE\Rutils\getRfuncArgs.m
TypeFunction
Last modified07-Feb-2023 19:26:30
Size (bytes)1129

Impacted Files

FileImpactedRequiredDependency Type
R2MATLABWrapper.m
R2MATLABWrapper (Line 19)
getRfuncArgs
Function Call

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
getRfuncArgs (Line 22)
MATLAB2Rconnector
Function Call
RfncArgs_4matlab.txt
getRfuncArgs (Line 23)
RfncArgs_4matlab
Function Argument
RfncContent_4matlab.txt
getRfuncArgs (Line 33)
RfncContent_4matlab
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
getRfuncArgs
Toolbox

getTermInfo

Problems

Impacted Files

FileImpactedRequiredDependency Type
getAdjustedResponseInner.m
getAdjustedResponseInner (Line 10)
getTermInfo
Function Call
interactionPlotter.m
getAdjustedResponse_logit (Line 590)
getTermInfo
Function Call

getUKBdictionary.m

Path
D:\MAGE\UKBB.Toolbox\getUKBdictionary.m
TypeFunction
Last modified26-May-2025 14:39:28
Size (bytes)7147

Required Files

FileImpactedRequiredDependency Type
getUKBdictionary.m
getUKBdictionary (Line 19)
getUKBdictionary
Function Argument
getfilenames.m
getUKBdictionary (Line 61)
getfilenames
Function Call
getfilenames.m
getUKBdictionary (Line 69)
getfilenames
Function Call
makeWSLpath.m
getUKBdictionary (Line 67)
makeWSLpath
Function Call
natsort.m
getUKBdictionary (Line 53)
natsort
Function Call
runbash.m
getUKBdictionary (Line 50)
runbash
Function Call
runbash.m
getUKBdictionary (Line 51)
runbash
Function Call
runbash.m
getUKBdictionary (Line 56)
runbash
Function Call
runbash.m
getUKBdictionary (Line 65)
runbash
Function Call
scdown.cgi?fmt=txt&id=1
getUKBdictionary (Line 117)
scdown
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
getUKBdictionary
Toolbox

getUKBdictionary.m

Path
D:\MATLAB.dependencies\MAGE\UKBB.Toolbox\getUKBdictionary.m
TypeFunction
Last modified26-May-2025 14:39:28
Size (bytes)7147

Impacted Files

FileImpactedRequiredDependency Type
dx_extract_dataset.m
dx_extract_dataset (Line 40)
getUKBdictionary
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 40)
getUKBdictionary
Function Call
getUKBdictionary.m
getUKBdictionary (Line 19)
getUKBdictionary
Function Argument
getUKBdictionary.m
getUKBdictionary (Line 19)
getUKBdictionary
Function Argument
phenoParser.m
phenoParser (Line 199)
getUKBdictionary
Function Call
phenoParser.m
phenoParser (Line 199)
getUKBdictionary
Function Call

Required Files

FileImpactedRequiredDependency Type
getUKBdictionary.m
getUKBdictionary (Line 19)
getUKBdictionary
Function Argument
getfilenames.m
getUKBdictionary (Line 61)
getfilenames
Function Call
getfilenames.m
getUKBdictionary (Line 69)
getfilenames
Function Call
makeWSLpath.m
getUKBdictionary (Line 67)
makeWSLpath
Function Call
natsort.m
getUKBdictionary (Line 53)
natsort
Function Call
runbash.m
getUKBdictionary (Line 50)
runbash
Function Call
runbash.m
getUKBdictionary (Line 51)
runbash
Function Call
runbash.m
getUKBdictionary (Line 56)
runbash
Function Call
runbash.m
getUKBdictionary (Line 65)
runbash
Function Call
scdown.cgi?fmt=txt&id=1
getUKBdictionary (Line 117)
scdown
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
getUKBdictionary
Toolbox

getUKBtrait.m

Path
D:\MATLAB.dependencies\MAGE\UKBB.Toolbox\getUKBtrait.m
TypeFunction
Last modified05-Apr-2022 12:13:17
Size (bytes)2622

Impacted Files

FileImpactedRequiredDependency Type
phenoParser.m
getUKBtrait_prop (Line 361)
getUKBtrait
Function Call
phenoParser.m
getUKBtrait_prop (Line 361)
getUKBtrait
Function Call

Required Files

FileImpactedRequiredDependency Type
UKB2MATfile
getUKBtrait (Line 51)
UKB2MATfile
Function Call
UKBtraitParser.m
getUKBtrait (Line 27)
UKBtraitParser
Function Call
mergeMultipleKeyterms.m
getUKBtrait (Line 32)
mergeMultipleKeyterms
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getUKBtrait
Toolbox

getUKB_alcohol.m

Path
D:\MAGE\UKBB.Toolbox\getUKB_alcohol.m
TypeFunction
Last modified25-Nov-2024 20:11:09
Size (bytes)13234

Required Files

FileImpactedRequiredDependency Type
Sex.mat
getUKB_alcohol (Line 46)
Sex
Function Argument
phenoParser.m
getUKB_alcohol (Line 35)
phenoParser
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getUKB_alcohol
Toolbox

getWES.m

Path
D:\MAGE\source\getWES.m
TypeFunction
Last modified30-May-2025 17:33:03
Size (bytes)42551

Required Files

FileImpactedRequiredDependency Type
EnsemblREST.m
getWESsingle (Line 244)
EnsemblREST
Function Call
bedreader.m
getWESsingle (Line 638)
bedreader
Function Call
bedreader.m
getWESsingle (Line 640)
bedreader
Function Call
bfilereader.m
getWESsingle (Line 286)
bfilereader
Function Call
bfilereader.m
getWESsingle (Line 329)
bfilereader
Function Call
bfilereader.m
readAnnoSetFiles (Line 795)
bfilereader
Function Call
bfilereader.m
readAnnoSetFiles (Line 848)
bfilereader
Function Call
bimreader.m
getWESsingle (Line 582)
bimreader
Function Call
bimreader.m
getWESsingle (Line 609)
bimreader
Function Call
bimreader.m
getWESsingle (Line 648)
bimreader
Function Call
getRandomName.m
getWESsingle (Line 529)
getRandomName
Function Call
getRandomName.m
geneCallMerger (Line 720)
getRandomName
Function Call
getRandomName.m
readAnnoSetFiles (Line 868)
getRandomName
Function Call
getfilenames.m
getWESsingle (Line 561)
getfilenames
Function Call
getfilenames.m
readAnnoSetFiles (Line 937)
getfilenames
Function Call
getfilenames.m
readAnnoSetFiles (Line 939)
getfilenames
Function Call
getfilenames.m
readAnnoSetFiles (Line 941)
getfilenames
Function Call
gnomad.m
getWESsingle (Line 253)
gnomad
Function Call
strshare.m
getWESsingle (Line 569)
strshare
Function Call
strshare.m
getWESsingle (Line 573)
strshare
Function Call
strshare.m
readAnnoSetFiles (Line 946)
strshare
Function Call
strshare.m
readAnnoSetFiles (Line 948)
strshare
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getWES
Toolbox

getWES.m

Path
D:\MATLAB.dependencies\MAGE\getWES.m
TypeFunction
Last modified17-Apr-2025 15:30:02
Size (bytes)44903

Impacted Files

FileImpactedRequiredDependency Type
getWES.m
getWES (Line 65)
getWES
Function Argument
gwasrunner.m
gwasrunner (Line 512)
getWES
Function Call
gwasrunner.m
gwasrunner (Line 512)
getWES
Function Call

Required Files

FileImpactedRequiredDependency Type
EnsemblREST.m
getWESsingle (Line 264)
EnsemblREST
Function Call
bedreader.m
getWESsingle (Line 679)
bedreader
Function Call
bedreader.m
getWESsingle (Line 681)
bedreader
Function Call
bfilereader.m
getWESsingle (Line 323)
bfilereader
Function Call
bfilereader.m
getWESsingle (Line 368)
bfilereader
Function Call
bfilereader.m
readAnnoSetFiles (Line 836)
bfilereader
Function Call
bfilereader.m
readAnnoSetFiles (Line 889)
bfilereader
Function Call
bimreader.m
getWESsingle (Line 623)
bimreader
Function Call
bimreader.m
getWESsingle (Line 650)
bimreader
Function Call
bimreader.m
getWESsingle (Line 689)
bimreader
Function Call
getRandomName.m
getWESsingle (Line 570)
getRandomName
Function Call
getRandomName.m
geneCallMerger (Line 761)
getRandomName
Function Call
getRandomName.m
readAnnoSetFiles (Line 909)
getRandomName
Function Call
getWES.m
getWES (Line 65)
getWES
Function Argument
getfilenames.m
getWESsingle (Line 602)
getfilenames
Function Call
getfilenames.m
readAnnoSetFiles (Line 978)
getfilenames
Function Call
getfilenames.m
readAnnoSetFiles (Line 980)
getfilenames
Function Call
getfilenames.m
readAnnoSetFiles (Line 982)
getfilenames
Function Call
gnomad.m
getWESsingle (Line 273)
gnomad
Function Call
strshare.m
getWESsingle (Line 610)
strshare
Function Call
strshare.m
getWESsingle (Line 614)
strshare
Function Call
strshare.m
readAnnoSetFiles (Line 987)
strshare
Function Call
strshare.m
readAnnoSetFiles (Line 989)
strshare
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
getWES
Toolbox

get_colormap.m

Path
D:\MAGE\dependencies\pyutils\get_colormap.m
TypeFunction
Last modified15-Apr-2025 12:36:42
Size (bytes)3390

Required Products

ProductImpactedDependency Type
MATLAB
get_colormap
Toolbox

get_colormap.m

Path
D:\MATLAB.dependencies\MAGE\pyutils\get_colormap.m
TypeFunction
Last modified15-Apr-2025 12:36:42
Size (bytes)3390

Impacted Files

FileImpactedRequiredDependency Type
effDotPlotter.m
effDotPlotter (Line 102)
get_colormap
Function Call
effDotPlotter.m
effDotPlotter (Line 248)
get_colormap
Function Call
effNetPlotter.m
effNetPlotter (Line 115)
get_colormap
Function Call
effNetPlotter.m
effNetPlotter (Line 125)
get_colormap
Function Call
effNetPlotter.m
effNetPlotter (Line 434)
get_colormap
Function Call
effNetPlotter.m
effNetPlotter (Line 448)
get_colormap
Function Call
effPlotter.m
addPcbar (Line 1007)
get_colormap
Function Call
effPlotter.m
effPlotter (Line 261)
get_colormap
Function Call
genePlotter.m
genePlotter (Line 568)
get_colormap
Function Call
genePlotter.m
genePlotter (Line 568)
get_colormap
Function Call
rarePlotter.m
rarePlotter (Line 526)
get_colormap
Function Call
rarePlotter.m
rarePlotter (Line 526)
get_colormap
Function Call
trainCVmodels.m
plotSHAP (Line 541)
get_colormap
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
get_colormap
Toolbox

ggvenn.m

Path
D:\MAGE\dependencies\Rwrappers\ggvenn.m
TypeFunction
Last modified03-Aug-2023 11:18:01
Size (bytes)2703

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
ggvenn (Line 55)
MATLAB2Rconnector
Function Call
getRandomName.m
ggvenn (Line 36)
getRandomName
Function Call
struct2rfun.m
ggvenn (Line 51)
struct2rfun
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
ggvenn
Toolbox

gNetworkPlot.m

Path
D:\MAGE\dependencies\ldsc\gNetworkPlot.m
TypeFunction
Last modified16-Mar-2023 15:52:31
Size (bytes)13898

Required Files

FileImpactedRequiredDependency Type
getMarkerBounds.m
gNetworkPlot (Line 210)
getMarkerBounds
Function Call
getMarkerBounds.m
gNetworkPlot (Line 305)
getMarkerBounds
Function Call
line2arrow.m
gNetworkPlot (Line 344)
line2arrow
Function Call

Required Products

ProductImpactedDependency Type
Bioinformatics Toolbox
gNetworkPlot (Line 37)
Function Call
MATLAB
gNetworkPlot
Toolbox
Statistics and Machine Learning Toolbox
gNetworkPlot (Line 119)
Function Call

gnomad.m

Path
D:\MAGE\dependencies\gnomAD\gnomad.m
TypeFunction
Last modified22-May-2025 12:08:43
Size (bytes)10647

Required Products

ProductImpactedDependency Type
MATLAB
gnomad
Toolbox

gnomad.m

Path
D:\MATLAB.dependencies\MAGE\gnomAD\gnomad.m
TypeFunction
Last modified22-May-2025 12:08:43
Size (bytes)10647

Impacted Files

FileImpactedRequiredDependency Type
coloc.m
coloc (Line 287)
gnomad
Function Call
genePlotter.m
genePlotter (Line 252)
gnomad
Function Call
genePlotter.m
genePlotter (Line 256)
gnomad
Function Call
genePlotter.m
genePlotter (Line 263)
gnomad
Function Call
genePlotter.m
genePlotter (Line 283)
gnomad
Function Call
genePlotter.m
genePlotter (Line 311)
gnomad
Function Call
genePlotter.m
genePlotter (Line 252)
gnomad
Function Call
genePlotter.m
genePlotter (Line 256)
gnomad
Function Call
genePlotter.m
genePlotter (Line 263)
gnomad
Function Call
genePlotter.m
genePlotter (Line 283)
gnomad
Function Call
genePlotter.m
genePlotter (Line 311)
gnomad
Function Call
getWES.m
getWESsingle (Line 253)
gnomad
Function Call
getWES.m
getWESsingle (Line 273)
gnomad
Function Call
mapVariant2gene.m
mapVariant2gene (Line 182)
gnomad
Function Call
mapVariant2gene.m
mapVariant2gene (Line 186)
gnomad
Function Call
mapVariant2gene.m
mapVariant2gene (Line 185)
gnomad
Function Call
mapVariant2gene.m
mapVariant2gene (Line 189)
gnomad
Function Call
rarePlotter.m
rarePlotter (Line 170)
gnomad
Function Call
rarePlotter.m
rarePlotter (Line 187)
gnomad
Function Call
rarePlotter.m
rarePlotter (Line 170)
gnomad
Function Call
rarePlotter.m
rarePlotter (Line 187)
gnomad
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
gnomad
Toolbox

gProfiler.m

Path
D:\MAGE\source\gProfiler.m
TypeFunction
Last modified31-Jan-2025 16:48:33
Size (bytes)846

Required Products

ProductImpactedDependency Type
MATLAB
gProfiler
Toolbox

GSEApy.m

Path
D:\MAGE\dependencies\pyutils\GSEApy.m
TypeFunction
Last modified02-May-2025 17:13:15
Size (bytes)15048

Required Files

FileImpactedRequiredDependency Type
GSEApy.m
getGSEApyDB (Line 207)
GSEApy
Function Argument
GSEApy.m
getGSEApyDB (Line 213)
GSEApy
Function Argument
colnames.m
writeGSEAtable (Line 220)
colnames
Function Call
truncateStr.m
writeGSEAtable (Line 232)
truncateStr
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
GSEApy
Toolbox

GSEApy.m

Path
D:\MATLAB.dependencies\MAGE\pyutils\GSEApy.m
TypeFunction
Last modified02-May-2025 17:13:15
Size (bytes)15048

Impacted Files

FileImpactedRequiredDependency Type
GSEApy.m
getGSEApyDB (Line 207)
GSEApy
Function Argument
GSEApy.m
getGSEApyDB (Line 213)
GSEApy
Function Argument
GSEApy.m
getGSEApyDB (Line 207)
GSEApy
Function Argument
GSEApy.m
getGSEApyDB (Line 213)
GSEApy
Function Argument

Required Files

FileImpactedRequiredDependency Type
GSEApy.m
getGSEApyDB (Line 207)
GSEApy
Function Argument
GSEApy.m
getGSEApyDB (Line 213)
GSEApy
Function Argument
colnames.m
writeGSEAtable (Line 220)
colnames
Function Call
truncateStr.m
writeGSEAtable (Line 232)
truncateStr
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
GSEApy
Toolbox

gwasCaller.m

Path
D:\MAGE\source\gwasCaller.m
TypeFunction
Last modified31-May-2025 15:38:52
Size (bytes)49599

Required Files

FileImpactedRequiredDependency Type
EnsemblREST.m
gwasCaller (Line 193)
EnsemblREST
Function Call
MATLAB2Rconnector.m
makeReport (Line 1037)
MATLAB2Rconnector
Function Call
addAttachedFiles
gene_based_tests (Line 641)
addAttachedFiles
Function Call
bfilereader.m
gene_based_tests (Line 637)
bfilereader
Function Argument
colnames.m
mergeDifferentGSSFolders (Line 1108)
colnames
Function Call
colnames.m
runPheWas (Line 457)
colnames
Function Call
duplicates.m
mergeDifferentGSSFolders (Line 1086)
duplicates
Function Call
genePlotter.m
call_genePlotter (Line 524)
genePlotter
Function Call
getRandomName.m
gene_based_tests (Line 627)
getRandomName
Function Call
getfilenames.m
makeReport (Line 1000)
getfilenames
Function Call
getfilenames.m
mergeDifferentGSSFolders (Line 1062)
getfilenames
Function Call
getfilenames.m
mergeDifferentGSSFolders (Line 1065)
getfilenames
Function Call
getfilenames.m
runPheWas (Line 427)
getfilenames
Function Call
getfilenames.m
runPheWas (Line 450)
getfilenames
Function Call
getfilenames.m
gene_based_tests (Line 592)
getfilenames
Function Call
getfilenames.m
gene_based_tests (Line 733)
getfilenames
Function Call
getfilenames.m
makeReport (Line 858)
getfilenames
Function Call
getfilenames.m
makeReport (Line 899)
getfilenames
Function Call
gwasrunner.m
gwasCaller (Line 293)
gwasrunner
Function Call
gwasrunner.m
runPheWas (Line 441)
gwasrunner
Function Call
gwasrunner.m
runPheWas (Line 475)
gwasrunner
Function Call
gwasrunner.m
gene_based_tests (Line 678)
gwasrunner
Function Argument
gwasrunner.m
gene_based_tests (Line 682)
gwasrunner
Function Call
ribocure.m
gwasCaller (Line 74)
ribocure
Function Argument
ribocure.m
gwasCaller (Line 75)
ribocure
Function Argument
strshare.m
gene_based_tests (Line 596)
strshare
Function Call
strshare.m
gene_based_tests (Line 597)
strshare
Function Call
strshare.m
gene_based_tests (Line 598)
strshare
Function Call
thisgene
gwasCaller (Line 249)
thisgene
Function Call

Required Products

ProductImpactedDependency Type
Bioinformatics Toolbox
gwasCaller (Line 310)
Function Call
Bioinformatics Toolbox
runPheWas (Line 462)
Function Call
Bioinformatics Toolbox
runPheWas (Line 481)
Function Call
MATLAB
gwasCaller
Toolbox
Parallel Computing Toolbox
gwasCaller (Line 114)
Function Call
Parallel Computing Toolbox
gwasCaller (Line 115)
Function Call
Parallel Computing Toolbox
gene_based_tests (Line 639)
Function Call
Parallel Computing Toolbox
gene_based_tests (Line 641)
Function Call

gwascatalog.m

Path
D:\MAGE\dependencies\GWAS Catalog\gwascatalog.m
TypeFunction
Last modified30-Apr-2025 10:34:12
Size (bytes)27931

Required Files

FileImpactedRequiredDependency Type
gwascatalog.m
gwascatalog (Line 43)
gwascatalog
Function Argument
mget
gwascatalogFTP (Line 237)
mget
Function Call
mget
gwascatalogFTP (Line 240)
mget
Function Call
mget
gwascatalogFTP (Line 243)
mget
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
gwascatalog
Toolbox

gwascatalog.m

Path
D:\MATLAB.dependencies\MAGE\GWAS Catalog\gwascatalog.m
TypeFunction
Last modified30-Apr-2025 10:34:12
Size (bytes)27931

Impacted Files

FileImpactedRequiredDependency Type
gwascatalog.m
gwascatalog (Line 43)
gwascatalog
Function Argument
gwascatalog.m
gwascatalog (Line 43)
gwascatalog
Function Argument

Required Files

FileImpactedRequiredDependency Type
gwascatalog.m
gwascatalog (Line 43)
gwascatalog
Function Argument
mget
gwascatalogFTP (Line 237)
mget
Function Call
mget
gwascatalogFTP (Line 240)
mget
Function Call
mget
gwascatalogFTP (Line 243)
mget
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
gwascatalog
Toolbox

gwasrunner.m

Path
D:\MAGE\source\gwasrunner.m
TypeFunction
Last modified31-May-2025 14:28:09
Size (bytes)190482

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
logistf (Line 3069)
MATLAB2Rconnector
Function Call
MATLAB2Rconnector.m
callSKAT (Line 4091)
MATLAB2Rconnector
Function Call
barPlotter.m
gwasrunner (Line 1464)
barPlotter
Function Call
bfilereader.m
call_regenie_in (Line 2468)
bfilereader
Function Call
bgireader.m
gwasrunner (Line 698)
bgireader
Function Call
callVEP.m
gwasrunner (Line 601)
callVEP
Function Call
call_regenie.m
call_regenie_in (Line 2691)
call_regenie
Function Call
chi2pval.m
scoretest (Line 2087)
chi2pval
Function Call
chi2pval.m
scoretest (Line 2112)
chi2pval
Function Call
chi2pval.m
scoretest (Line 2130)
chi2pval
Function Call
colnames.m
gwasrunner (Line 933)
colnames
Function Call
fileparts2.m
call_regenie_in (Line 2703)
fileparts2
Function Call
fitSurvCox.m
runModels (Line 1876)
fitSurvCox
Function Call
getPheno.m
gwasrunner (Line 985)
getPheno
Function Call
getQCEID.m
gwasrunner (Line 387)
getQCEID
Function Call
getRandomName.m
call_regenie_in (Line 2437)
getRandomName
Function Call
getWES.m
gwasrunner (Line 512)
getWES
Function Call
getbulkgeno.m
gwasrunner (Line 690)
getbulkgeno
Function Call
getbulkgeno.m
gwasrunner (Line 710)
getbulkgeno
Function Call
getfilenames.m
call_regenie_in (Line 2617)
getfilenames
Function Call
getfilenames.m
call_regenie_in (Line 2695)
getfilenames
Function Call
getfilenames.m
call_regenie_in (Line 2697)
getfilenames
Function Call
gwasrunner.m
gwasrunner (Line 241)
gwasrunner
Function Argument
interactionPlotter.m
runModels (Line 2027)
interactionPlotter
Function Call
makeWSLpath.m
call_regenie_in (Line 2470)
makeWSLpath
Function Call
makeWSLpath.m
readPredFiles (Line 4552)
makeWSLpath
Function Call
natsort.m
readPredFiles (Line 4543)
natsort
Function Call
plotResiduals
runModels (Line 1969)
plotResiduals
Function Call
plotResiduals
runModels (Line 1971)
plotResiduals
Function Call
plotResiduals
runModels (Line 1973)
plotResiduals
Function Call
progressGen.m
gwasrunner (Line 1299)
progressGen
Function Call
progressGen.m
gwasrunner (Line 1302)
progressGen
Function Call
progressGen.m
gwasrunner (Line 1304)
progressGen
Function Call
progressGen.m
gwasrunner (Line 1347)
progressGen
Function Call
progressGen.m
gwasrunner (Line 1386)
progressGen
Function Call
progressGen.m
gwasrunner (Line 1409)
progressGen
Function Call
progressGen.m
gwasrunner (Line 1411)
progressGen
Function Call
progressGen.m
gwasrunner (Line 1436)
progressGen
Function Call
progressGen.m
runModels (Line 1729)
progressGen
Function Call
progressGen.m
runModels (Line 1829)
progressGen
Function Call
progressGen.m
runModels (Line 1890)
progressGen
Function Call
progressGen.m
runModels (Line 1895)
progressGen
Function Call
progressGen.m
runModels (Line 2002)
progressGen
Function Call
progressGen.m
scoretest (Line 2175)
progressGen
Function Call
rarePlotter.m
gwasrunner (Line 1476)
rarePlotter
Function Call
struct2array.m
pruneGeneBasedResults (Line 4408)
struct2array
Function Call
truncateStr.m
pruneMore (Line 3612)
truncateStr
Function Call
truncateStr.m
pruneMore (Line 3668)
truncateStr
Function Call
vif.m
runModels (Line 1978)
vif
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
gwasrunner
Toolbox
Parallel Computing Toolbox
runModelsPar (Line 2355)
Toolbox
Parallel Computing Toolbox
gwasrunner (Line 365)
Function Call
Parallel Computing Toolbox
gwasrunner (Line 372)
Function Call
Parallel Computing Toolbox
gwasrunner (Line 380)
Function Call
Parallel Computing Toolbox
gwasrunner (Line 382)
Function Call
Statistics and Machine Learning Toolbox
gwasrunner (Line 1245)
Function Call
Statistics and Machine Learning Toolbox
runModels (Line 1936)
Function Call
Statistics and Machine Learning Toolbox
runModels (Line 1944)
Function Call
Statistics and Machine Learning Toolbox
runModels (Line 1950)
Function Call
Statistics and Machine Learning Toolbox
runModels (Line 1958)
Function Call
Statistics and Machine Learning Toolbox
scoretest (Line 2069)
Function Call
Statistics and Machine Learning Toolbox
scoretest (Line 2084)
Function Call
Statistics and Machine Learning Toolbox
scoretest (Line 2090)
Function Call
Statistics and Machine Learning Toolbox
scoretest (Line 2092)
Function Call
Statistics and Machine Learning Toolbox
scoretest (Line 2113)
Function Call
Statistics and Machine Learning Toolbox
scoretest (Line 2114)
Function Call
Statistics and Machine Learning Toolbox
scoretest (Line 2131)
Function Call
Statistics and Machine Learning Toolbox
runModelsPar (Line 2383)
Function Call
Statistics and Machine Learning Toolbox
runModelsPar (Line 2387)
Function Call
Statistics and Machine Learning Toolbox
runModelsPar (Line 2391)
Function Call
Statistics and Machine Learning Toolbox
runModelsPar (Line 2395)
Function Call
Statistics and Machine Learning Toolbox
call_regenie_in (Line 2768)
Function Call
Statistics and Machine Learning Toolbox
call_regenie_in (Line 2769)
Function Call
Statistics and Machine Learning Toolbox
toCleanTabDES (Line 3586)
Function Call
Statistics and Machine Learning Toolbox
callSKAT (Line 3871)
Function Call
Statistics and Machine Learning Toolbox
callSKAT (Line 3882)
Function Call
Statistics and Machine Learning Toolbox
callSKAT (Line 3890)
Function Call
Statistics and Machine Learning Toolbox
callSKAT (Line 3894)
Function Call
Statistics and Machine Learning Toolbox
callSKAT (Line 3897)
Function Call
Statistics and Machine Learning Toolbox
callSKAT (Line 3901)
Function Call

gwasrunner.m

Path
D:\MATLAB.dependencies\MAGE\gwasrunner.m
TypeFunction
Last modified31-May-2025 14:26:33
Size (bytes)190696

Impacted Files

FileImpactedRequiredDependency Type
gwasCaller.m
gwasCaller (Line 293)
gwasrunner
Function Call
gwasCaller.m
runPheWas (Line 441)
gwasrunner
Function Call
gwasCaller.m
runPheWas (Line 475)
gwasrunner
Function Call
gwasCaller.m
gene_based_tests (Line 678)
gwasrunner
Function Argument
gwasCaller.m
gene_based_tests (Line 682)
gwasrunner
Function Call
gwasrunner.m
gwasrunner (Line 241)
gwasrunner
Function Argument
gwasrunner.m
gwasrunner (Line 241)
gwasrunner
Function Argument
gwasrunner.m
gwasrunner (Line 274)
gwasrunner
Function Argument
gwasrunner.m
gwasrunner (Line 305)
gwasrunner
Function Argument
ribocure.m
ribocure (Line 307)
gwasrunner
Function Call
ribocure.m
runPheWas (Line 455)
gwasrunner
Function Call
ribocure.m
runPheWas (Line 489)
gwasrunner
Function Call
ribocure.m
gene_based_tests (Line 697)
gwasrunner
Function Argument
ribocure.m
gene_based_tests (Line 698)
gwasrunner
Function Argument
ribocure.m
gene_based_tests (Line 699)
gwasrunner
Function Argument
ribocure.m
gene_based_tests (Line 704)
gwasrunner
Function Call
testPhenoparser.m
testPhenoparser (Line 96)
gwasrunner
Function Call

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
logistf (Line 3069)
MATLAB2Rconnector
Function Call
MATLAB2Rconnector.m
callSKAT (Line 4091)
MATLAB2Rconnector
Function Call
barPlotter.m
gwasrunner (Line 1464)
barPlotter
Function Call
bfilereader.m
call_regenie_in (Line 2468)
bfilereader
Function Call
bgireader.m
gwasrunner (Line 698)
bgireader
Function Call
callVEP.m
gwasrunner (Line 601)
callVEP
Function Call
call_regenie.m
call_regenie_in (Line 2691)
call_regenie
Function Call
chi2pval.m
scoretest (Line 2087)
chi2pval
Function Call
chi2pval.m
scoretest (Line 2112)
chi2pval
Function Call
chi2pval.m
scoretest (Line 2130)
chi2pval
Function Call
colnames.m
gwasrunner (Line 933)
colnames
Function Call
fileparts2.m
call_regenie_in (Line 2703)
fileparts2
Function Call
fitSurvCox.m
runModels (Line 1876)
fitSurvCox
Function Call
getPheno.m
gwasrunner (Line 985)
getPheno
Function Call
getQCEID.m
gwasrunner (Line 387)
getQCEID
Function Call
getRandomName.m
call_regenie_in (Line 2437)
getRandomName
Function Call
getWES.m
gwasrunner (Line 512)
getWES
Function Call
getbulkgeno.m
gwasrunner (Line 690)
getbulkgeno
Function Call
getbulkgeno.m
gwasrunner (Line 710)
getbulkgeno
Function Call
getfilenames.m
call_regenie_in (Line 2617)
getfilenames
Function Call
getfilenames.m
call_regenie_in (Line 2695)
getfilenames
Function Call
getfilenames.m
call_regenie_in (Line 2697)
getfilenames
Function Call
gwasrunner.m
gwasrunner (Line 241)
gwasrunner
Function Argument
gwasrunner.m
gwasrunner (Line 274)
gwasrunner
Function Argument
gwasrunner.m
gwasrunner (Line 305)
gwasrunner
Function Argument
interactionPlotter.m
runModels (Line 2027)
interactionPlotter
Function Call
makeWSLpath.m
call_regenie_in (Line 2470)
makeWSLpath
Function Call
makeWSLpath.m
readPredFiles (Line 4552)
makeWSLpath
Function Call
natsort.m
readPredFiles (Line 4543)
natsort
Function Call
plotResiduals
runModels (Line 1969)
plotResiduals
Function Call
plotResiduals
runModels (Line 1971)
plotResiduals
Function Call
plotResiduals
runModels (Line 1973)
plotResiduals
Function Call
progressGen.m
gwasrunner (Line 1299)
progressGen
Function Call
progressGen.m
gwasrunner (Line 1302)
progressGen
Function Call
progressGen.m
gwasrunner (Line 1304)
progressGen
Function Call
progressGen.m
gwasrunner (Line 1347)
progressGen
Function Call
progressGen.m
gwasrunner (Line 1386)
progressGen
Function Call
progressGen.m
gwasrunner (Line 1409)
progressGen
Function Call
progressGen.m
gwasrunner (Line 1411)
progressGen
Function Call
progressGen.m
gwasrunner (Line 1436)
progressGen
Function Call
progressGen.m
runModels (Line 1729)
progressGen
Function Call
progressGen.m
runModels (Line 1829)
progressGen
Function Call
progressGen.m
runModels (Line 1890)
progressGen
Function Call
progressGen.m
runModels (Line 1895)
progressGen
Function Call
progressGen.m
runModels (Line 2002)
progressGen
Function Call
progressGen.m
scoretest (Line 2175)
progressGen
Function Call
rarePlotter.m
gwasrunner (Line 1476)
rarePlotter
Function Call
struct2array.m
pruneGeneBasedResults (Line 4408)
struct2array
Function Call
truncateStr.m
pruneMore (Line 3612)
truncateStr
Function Call
truncateStr.m
pruneMore (Line 3668)
truncateStr
Function Call
vif.m
runModels (Line 1978)
vif
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
gwasrunner
Toolbox
Parallel Computing Toolbox
runModelsPar (Line 2355)
Toolbox
Parallel Computing Toolbox
gwasrunner (Line 365)
Function Call
Parallel Computing Toolbox
gwasrunner (Line 372)
Function Call
Parallel Computing Toolbox
gwasrunner (Line 380)
Function Call
Parallel Computing Toolbox
gwasrunner (Line 382)
Function Call
Statistics and Machine Learning Toolbox
gwasrunner (Line 1245)
Function Call
Statistics and Machine Learning Toolbox
runModels (Line 1936)
Function Call
Statistics and Machine Learning Toolbox
runModels (Line 1944)
Function Call
Statistics and Machine Learning Toolbox
runModels (Line 1950)
Function Call
Statistics and Machine Learning Toolbox
runModels (Line 1958)
Function Call
Statistics and Machine Learning Toolbox
scoretest (Line 2069)
Function Call
Statistics and Machine Learning Toolbox
scoretest (Line 2084)
Function Call
Statistics and Machine Learning Toolbox
scoretest (Line 2090)
Function Call
Statistics and Machine Learning Toolbox
scoretest (Line 2092)
Function Call
Statistics and Machine Learning Toolbox
scoretest (Line 2113)
Function Call
Statistics and Machine Learning Toolbox
scoretest (Line 2114)
Function Call
Statistics and Machine Learning Toolbox
scoretest (Line 2131)
Function Call
Statistics and Machine Learning Toolbox
runModelsPar (Line 2383)
Function Call
Statistics and Machine Learning Toolbox
runModelsPar (Line 2387)
Function Call
Statistics and Machine Learning Toolbox
runModelsPar (Line 2391)
Function Call
Statistics and Machine Learning Toolbox
runModelsPar (Line 2395)
Function Call
Statistics and Machine Learning Toolbox
call_regenie_in (Line 2768)
Function Call
Statistics and Machine Learning Toolbox
call_regenie_in (Line 2769)
Function Call
Statistics and Machine Learning Toolbox
toCleanTabDES (Line 3586)
Function Call
Statistics and Machine Learning Toolbox
callSKAT (Line 3871)
Function Call
Statistics and Machine Learning Toolbox
callSKAT (Line 3882)
Function Call
Statistics and Machine Learning Toolbox
callSKAT (Line 3890)
Function Call
Statistics and Machine Learning Toolbox
callSKAT (Line 3894)
Function Call
Statistics and Machine Learning Toolbox
callSKAT (Line 3897)
Function Call
Statistics and Machine Learning Toolbox
callSKAT (Line 3901)
Function Call

gzipdecode.m

Path
D:\MAGE\dependencies\JSONLab\gzipdecode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)2290

Required Files

FileImpactedRequiredDependency Type
isoctavemesh.m
gzipdecode (Line 46)
isoctavemesh
Function Call
zmat
gzipdecode (Line 41)
zmat
Function Call
zmat
gzipdecode (Line 43)
zmat
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
gzipdecode
Toolbox

gzipencode.m

Path
D:\MAGE\dependencies\JSONLab\gzipencode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1807

Required Files

FileImpactedRequiredDependency Type
isoctavemesh.m
gzipencode (Line 42)
isoctavemesh
Function Call
zmat
gzipencode (Line 40)
zmat
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
gzipencode
Toolbox

hasnext

Problems

Impacted Files

FileImpactedRequiredDependency Type
vcftrimmer.m
vcftrimmerReducer (Line 251)
hasnext
Function Call

Homo_sapiens.GRCh37.87.gtf.gene.mat

Path
D:\MATLAB.dependencies\MAGE\GTF\Homo_sapiens.GRCh37.87.gtf.gene.mat
TypeMAT-file
Last modified03-Feb-2023 08:48:57
Size (bytes)1164003

Impacted Files

FileImpactedRequiredDependency Type
pops.m
pops (Line 44)
Homo_sapiens.GRCh37.87.gtf.gene
Function Argument
pops.m
pops (Line 44)
Homo_sapiens.GRCh37.87.gtf.gene
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
Homo_sapiens.GRCh37.87.gtf.gene
Toolbox

hwe.m

Path
D:\MAGE\source\hwe.m
TypeFunction
Last modified08-Sep-2020 09:59:21
Size (bytes)600

Required Files

FileImpactedRequiredDependency Type
chi2pval.m
hwe (Line 25)
chi2pval
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
hwe
Toolbox

identifyVar

Problems

Impacted Files

FileImpactedRequiredDependency Type
getAdjustedResponseInner.m
getAdjustedResponseInner (Line 15)
identifyVar
Function Call
interactionPlotter.m
getAdjustedResponse_logit (Line 595)
identifyVar
Function Call

inStr

Problems

Impacted Files

FileImpactedRequiredDependency Type
loadjson.m
parse_array (Line 219)
inStr
Function Call
loadjson.m
parse_array (Line 246)
inStr
Function Call
loadjson.m
parse_array (Line 219)
inStr
Function Call
loadjson.m
parse_array (Line 246)
inStr
Function Call

interactionHelper.m

Path
D:\MAGE\dependencies\Rutils\interactionHelper.m
TypeFunction
Last modified26-May-2025 11:41:24
Size (bytes)3163

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
interactionHelper (Line 60)
MATLAB2Rconnector
Function Call
struct2rfun.m
interactionHelper (Line 58)
struct2rfun
Function Call
table2Rdf.m
interactionHelper (Line 47)
table2Rdf
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
interactionHelper
Toolbox

interactionPlotter.m

Path
D:\MATLAB.dependencies\MAGE\interactionPlotter.m
TypeFunction
Last modified15-Oct-2024 12:33:21
Size (bytes)25502

Impacted Files

FileImpactedRequiredDependency Type
gwasrunner.m
runModels (Line 2027)
interactionPlotter
Function Call
gwasrunner.m
runModels (Line 2027)
interactionPlotter
Function Call
interactionPlotter.p
interactionPlotter
interactionPlotter
P Code

Required Files

FileImpactedRequiredDependency Type
getAdjustedResponseInner.m
InteractionPredictions (Line 413)
getAdjustedResponseInner
Function Call
getAdjustedResponseInner.m
InteractionPredictions (Line 431)
getAdjustedResponseInner
Function Call
getTermInfo
getAdjustedResponse_logit (Line 590)
getTermInfo
Function Call
identifyVar
getAdjustedResponse_logit (Line 595)
identifyVar
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
interactionPlotter
Toolbox
Statistics and Machine Learning Toolbox
interactionPlotter (Line 160)
Function Call
Statistics and Machine Learning Toolbox
InteractionPredictions (Line 414)
Function Call
Statistics and Machine Learning Toolbox
InteractionPredictions (Line 417)
Function Call
Statistics and Machine Learning Toolbox
InteractionPredictions (Line 432)
Function Call
Statistics and Machine Learning Toolbox
InteractionPredictions (Line 435)
Function Call
Statistics and Machine Learning Toolbox
getTermInfoPUBLIC (Line 475)
Function Call
Statistics and Machine Learning Toolbox
getInteractionXDataPUBLIC (Line 508)
Function Call
Statistics and Machine Learning Toolbox
reduceterm (Line 687)
Function Call
Statistics and Machine Learning Toolbox
gettermmean (Line 726)
Function Call

interactionPlotter.p

Path
D:\MAGE\source\interactionPlotter.p
TypeP-code
Last modified30-May-2025 17:26:28
Size (bytes)5244

Required Files

FileImpactedRequiredDependency Type
interactionPlotter.m
interactionPlotter
interactionPlotter
P Code

Required Products

ProductImpactedDependency Type
MATLAB
interactionPlotter
Toolbox

irnt.m

Path
D:\MAGE\source\irnt.m
TypeFunction
Last modified01-Aug-2024 13:10:32
Size (bytes)464

Required Products

ProductImpactedDependency Type
MATLAB
irnt
Toolbox
Statistics and Machine Learning Toolbox
irnt (Line 15)
Function Call
Statistics and Machine Learning Toolbox
irnt (Line 18)
Function Call

isoctavemesh.m

Path
D:\MAGE\dependencies\JSONLab\isoctavemesh.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)497

Required Files

FileImpactedRequiredDependency Type
OCTAVE_VERSION
isoctavemesh (Line 18)
OCTAVE_VERSION
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
isoctavemesh
Toolbox

isoctavemesh.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\isoctavemesh.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)497

Impacted Files

FileImpactedRequiredDependency Type
base64decode.m
base64decode (Line 36)
isoctavemesh
Function Call
base64decode.m
base64decode (Line 36)
isoctavemesh
Function Call
base64encode.m
base64encode (Line 46)
isoctavemesh
Function Call
base64encode.m
base64encode (Line 46)
isoctavemesh
Function Call
gzipdecode.m
gzipdecode (Line 46)
isoctavemesh
Function Call
gzipencode.m
gzipencode (Line 42)
isoctavemesh
Function Call
jdatadecode.m
jdatadecode (Line 87)
isoctavemesh
Function Call
jdatadecode.m
jdatadecode (Line 87)
isoctavemesh
Function Call
jdataencode.m
jdataencode (Line 82)
isoctavemesh
Function Call
jdataencode.m
jdataencode (Line 82)
isoctavemesh
Function Call
loadmsgpack.m
parsestring (Line 202)
isoctavemesh
Function Call
loadmsgpack.m
parsestring (Line 202)
isoctavemesh
Function Call
savebj.m
savebj (Line 151)
isoctavemesh
Function Call
savebj.m
savebj (Line 151)
isoctavemesh
Function Call
savejson.m
savejson (Line 140)
isoctavemesh
Function Call
savejson.m
savejson (Line 140)
isoctavemesh
Function Call
zlibdecode.m
zlibdecode (Line 47)
isoctavemesh
Function Call
zlibencode.m
zlibencode (Line 41)
isoctavemesh
Function Call

Required Files

FileImpactedRequiredDependency Type
OCTAVE_VERSION
isoctavemesh (Line 18)
OCTAVE_VERSION
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
isoctavemesh
Toolbox

jdatadecode.m

Path
D:\MAGE\dependencies\JSONLab\jdatadecode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)19952

Required Files

FileImpactedRequiredDependency Type
base64decode.m
jdatadecode (Line 135)
base64decode
Function Call
base64decode.m
jdatadecode (Line 449)
base64decode
Function Call
isoctavemesh.m
jdatadecode (Line 87)
isoctavemesh
Function Call
jdatadecode.m
jdatadecode (Line 102)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 104)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 117)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 147)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 150)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 159)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 173)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 186)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 191)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 225)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 252)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 314)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 383)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 418)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 71)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 76)
jdatadecode
Function Call
jsonopt.m
jdatadecode (Line 66)
jsonopt
Function Call
jsonopt.m
jdatadecode (Line 85)
jsonopt
Function Call
jsonopt.m
jdatadecode (Line 86)
jsonopt
Function Call
jsonopt.m
jdatadecode (Line 88)
jsonopt
Function Call
jsonopt.m
jdatadecode (Line 90)
jsonopt
Function Call
jsonopt.m
jdatadecode (Line 98)
jsonopt
Function Call
varargin2struct.m
jdatadecode (Line 64)
varargin2struct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
jdatadecode
Toolbox

jdatadecode.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\jdatadecode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)19952

Impacted Files

FileImpactedRequiredDependency Type
jdatadecode.m
jdatadecode (Line 102)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 104)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 117)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 147)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 150)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 159)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 173)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 186)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 191)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 225)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 252)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 314)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 383)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 418)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 71)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 76)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 102)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 104)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 117)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 147)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 150)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 159)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 173)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 186)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 191)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 225)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 252)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 314)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 383)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 418)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 71)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 76)
jdatadecode
Function Call
jload.m
jload (Line 94)
jdatadecode
Function Call
loadbj.m
loadbj (Line 123)
jdatadecode
Function Call
loadbj.m
loadbj (Line 123)
jdatadecode
Function Call
loadjson.m
loadjson (Line 161)
jdatadecode
Function Call
loadjson.m
loadjson (Line 161)
jdatadecode
Function Call
loadmsgpack.m
loadmsgpack (Line 50)
jdatadecode
Function Call
loadmsgpack.m
loadmsgpack (Line 52)
jdatadecode
Function Call
loadmsgpack.m
loadmsgpack (Line 50)
jdatadecode
Function Call
loadmsgpack.m
loadmsgpack (Line 52)
jdatadecode
Function Call

Required Files

FileImpactedRequiredDependency Type
base64decode.m
jdatadecode (Line 135)
base64decode
Function Call
base64decode.m
jdatadecode (Line 449)
base64decode
Function Call
isoctavemesh.m
jdatadecode (Line 87)
isoctavemesh
Function Call
jdatadecode.m
jdatadecode (Line 102)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 104)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 117)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 147)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 150)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 159)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 173)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 186)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 191)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 225)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 252)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 314)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 383)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 418)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 71)
jdatadecode
Function Call
jdatadecode.m
jdatadecode (Line 76)
jdatadecode
Function Call
jsonopt.m
jdatadecode (Line 66)
jsonopt
Function Call
jsonopt.m
jdatadecode (Line 85)
jsonopt
Function Call
jsonopt.m
jdatadecode (Line 86)
jsonopt
Function Call
jsonopt.m
jdatadecode (Line 88)
jsonopt
Function Call
jsonopt.m
jdatadecode (Line 90)
jsonopt
Function Call
jsonopt.m
jdatadecode (Line 98)
jsonopt
Function Call
varargin2struct.m
jdatadecode (Line 64)
varargin2struct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
jdatadecode
Toolbox

jdataencode.m

Path
D:\MAGE\dependencies\JSONLab\jdataencode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)15644

Required Files

FileImpactedRequiredDependency Type
base64encode.m
mat2jd (Line 323)
base64encode
Function Call
base64encode.m
any2jd (Line 392)
base64encode
Function Call
encodevarname.m
graph2jd (Line 360)
encodevarname
Function Call
isoctavemesh.m
jdataencode (Line 82)
isoctavemesh
Function Call
jsonopt.m
jdataencode (Line 83)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 85)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 87)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 88)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 89)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 90)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 91)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 92)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 93)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 94)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 95)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 96)
jsonopt
Function Call
varargin2struct.m
jdataencode (Line 81)
varargin2struct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
jdataencode
Toolbox

jdataencode.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\jdataencode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)15644

Impacted Files

FileImpactedRequiredDependency Type
jsave.m
jsave (Line 109)
jdataencode
Function Call
jsave.m
jsave (Line 113)
jdataencode
Function Call
savebj.m
savebj (Line 168)
jdataencode
Function Call
savebj.m
obj2ubjson (Line 301)
jdataencode
Function Call
savebj.m
savebj (Line 168)
jdataencode
Function Call
savebj.m
obj2ubjson (Line 301)
jdataencode
Function Call
savejson.m
savejson (Line 162)
jdataencode
Function Call
savejson.m
obj2json (Line 278)
jdataencode
Function Call
savejson.m
savejson (Line 162)
jdataencode
Function Call
savejson.m
obj2json (Line 278)
jdataencode
Function Call

Required Files

FileImpactedRequiredDependency Type
base64encode.m
mat2jd (Line 323)
base64encode
Function Call
base64encode.m
any2jd (Line 392)
base64encode
Function Call
encodevarname.m
graph2jd (Line 360)
encodevarname
Function Call
isoctavemesh.m
jdataencode (Line 82)
isoctavemesh
Function Call
jsonopt.m
jdataencode (Line 83)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 85)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 87)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 88)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 89)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 90)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 91)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 92)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 93)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 94)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 95)
jsonopt
Function Call
jsonopt.m
jdataencode (Line 96)
jsonopt
Function Call
varargin2struct.m
jdataencode (Line 81)
varargin2struct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
jdataencode
Toolbox

jload.m

Path
D:\MAGE\dependencies\JSONLab\jload.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)3704

Required Files

FileImpactedRequiredDependency Type
encodevarname.m
jload (Line 86)
encodevarname
Function Call
jdatadecode.m
jload (Line 94)
jdatadecode
Function Call
jsonopt.m
jload (Line 61)
jsonopt
Function Call
jsonopt.m
jload (Line 72)
jsonopt
Function Call
jsonopt.m
jload (Line 85)
jsonopt
Function Call
jsonopt.m
jload (Line 93)
jsonopt
Function Call
loadbj.m
jload (Line 63)
loadbj
Function Call
loadjson.m
jload (Line 65)
loadjson
Function Call
loadjson.m
jload (Line 67)
loadjson
Function Call
loadmsgpack.m
jload (Line 69)
loadmsgpack
Function Call
varargin2struct.m
jload (Line 59)
varargin2struct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
jload
Toolbox

joinFileCols.c

Path
D:\MAGE\dependencies\joinFileCols\joinFileCols.c
TypeC Source
Last modified04-Dec-2024 11:48:30
Size (bytes)6773

Required Add-Ons

ToolboxImpactedDependency Type
C/C++ System Header
Line 1
C Source
C/C++ System Header
Line 2
C Source
C/C++ System Header
Line 3
C Source
C/C++ System Header
Line 4
C Source
C/C++ Library Header
Line 5
C Source

joinFileCols.m

Path
D:\MAGE\dependencies\joinFileCols\joinFileCols.m
TypeFunction
Last modified04-Dec-2024 11:41:21
Size (bytes)6949

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
joinFileCols (Line 36)
bfilereader
Function Call
joinFileCols.m
joinFileCols (Line 47)
joinFileCols
Function Argument
makeWSLpath.m
joinFileCols (Line 42)
makeWSLpath
Function Call
makeWSLpath.m
joinFileCols (Line 49)
makeWSLpath
Function Call
runbash.m
joinFileCols (Line 157)
runbash
Function Call
runbash.m
joinFileCols (Line 57)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
joinFileCols
Toolbox

joinFileCols.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\joinFileCols\joinFileCols.m
TypeFunction
Last modified04-Dec-2024 11:41:21
Size (bytes)6949

Impacted Files

FileImpactedRequiredDependency Type
joinFileCols.m
joinFileCols (Line 47)
joinFileCols
Function Argument
joinFileCols.m
joinFileCols (Line 47)
joinFileCols
Function Argument

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
joinFileCols (Line 36)
bfilereader
Function Call
joinFileCols.m
joinFileCols (Line 47)
joinFileCols
Function Argument
makeWSLpath.m
joinFileCols (Line 42)
makeWSLpath
Function Call
makeWSLpath.m
joinFileCols (Line 49)
makeWSLpath
Function Call
runbash.m
joinFileCols (Line 157)
runbash
Function Call
runbash.m
joinFileCols (Line 57)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
joinFileCols
Toolbox

jsave.m

Path
D:\MAGE\dependencies\JSONLab\jsave.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)4095

Required Files

FileImpactedRequiredDependency Type
encodevarname.m
jsave (Line 85)
encodevarname
Function Call
jdataencode.m
jsave (Line 109)
jdataencode
Function Call
jdataencode.m
jsave (Line 113)
jdataencode
Function Call
jsonopt.m
jsave (Line 105)
jsonopt
Function Call
jsonopt.m
jsave (Line 119)
jsonopt
Function Call
jsonopt.m
jsave (Line 53)
jsonopt
Function Call
jsonopt.m
jsave (Line 56)
jsonopt
Function Call
savebj.m
jsave (Line 92)
savebj
Function Call
savejson.m
jsave (Line 94)
savejson
Function Call
savejson.m
jsave (Line 96)
savejson
Function Call
savemsgpack.m
jsave (Line 98)
savemsgpack
Function Call
varargin2struct.m
jsave (Line 51)
varargin2struct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
jsave
Toolbox

jsonopt.m

Path
D:\MAGE\dependencies\JSONLab\jsonopt.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)924

Required Products

ProductImpactedDependency Type
MATLAB
jsonopt
Toolbox

jsonopt.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\jsonopt.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)924

Impacted Files

FileImpactedRequiredDependency Type
decodevarname.m
decodevarname (Line 38)
jsonopt
Function Call
decodevarname.m
decodevarname (Line 38)
jsonopt
Function Call
jdatadecode.m
jdatadecode (Line 66)
jsonopt
Function Call
jdatadecode.m
jdatadecode (Line 85)
jsonopt
Function Call
jdatadecode.m
jdatadecode (Line 86)
jsonopt
Function Call
jdatadecode.m
jdatadecode (Line 88)
jsonopt
Function Call
jdatadecode.m
jdatadecode (Line 90)
jsonopt
Function Call
jdatadecode.m
jdatadecode (Line 98)
jsonopt
Function Call
jdatadecode.m
jdatadecode (Line 66)
jsonopt
Function Call
jdatadecode.m
jdatadecode (Line 85)
jsonopt
Function Call
jdatadecode.m
jdatadecode (Line 86)
jsonopt
Function Call
jdatadecode.m
jdatadecode (Line 88)
jsonopt
Function Call
jdatadecode.m
jdatadecode (Line 90)
jsonopt
Function Call
jdatadecode.m
jdatadecode (Line 98)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 83)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 85)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 87)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 88)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 89)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 90)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 91)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 92)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 93)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 94)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 95)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 96)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 83)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 85)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 87)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 88)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 89)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 90)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 91)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 92)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 93)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 94)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 95)
jsonopt
Function Call
jdataencode.m
jdataencode (Line 96)
jsonopt
Function Call
jload.m
jload (Line 61)
jsonopt
Function Call
jload.m
jload (Line 72)
jsonopt
Function Call
jload.m
jload (Line 85)
jsonopt
Function Call
jload.m
jload (Line 93)
jsonopt
Function Call
jsave.m
jsave (Line 105)
jsonopt
Function Call
jsave.m
jsave (Line 119)
jsonopt
Function Call
jsave.m
jsave (Line 53)
jsonopt
Function Call
jsave.m
jsave (Line 56)
jsonopt
Function Call
loadbj.m
loadbj (Line 122)
jsonopt
Function Call
loadbj.m
loadbj (Line 80)
jsonopt
Function Call
loadbj.m
loadbj (Line 81)
jsonopt
Function Call
loadbj.m
loadbj (Line 82)
jsonopt
Function Call
loadbj.m
loadbj (Line 83)
jsonopt
Function Call
loadbj.m
loadbj (Line 86)
jsonopt
Function Call
loadbj.m
loadbj (Line 88)
jsonopt
Function Call
loadbj.m
loadbj (Line 122)
jsonopt
Function Call
loadbj.m
loadbj (Line 80)
jsonopt
Function Call
loadbj.m
loadbj (Line 81)
jsonopt
Function Call
loadbj.m
loadbj (Line 82)
jsonopt
Function Call
loadbj.m
loadbj (Line 83)
jsonopt
Function Call
loadbj.m
loadbj (Line 86)
jsonopt
Function Call
loadbj.m
loadbj (Line 88)
jsonopt
Function Call
loadjson.m
loadjson (Line 116)
jsonopt
Function Call
loadjson.m
loadjson (Line 117)
jsonopt
Function Call
loadjson.m
loadjson (Line 118)
jsonopt
Function Call
loadjson.m
loadjson (Line 119)
jsonopt
Function Call
loadjson.m
loadjson (Line 120)
jsonopt
Function Call
loadjson.m
loadjson (Line 121)
jsonopt
Function Call
loadjson.m
loadjson (Line 124)
jsonopt
Function Call
loadjson.m
loadjson (Line 128)
jsonopt
Function Call
loadjson.m
loadjson (Line 160)
jsonopt
Function Call
loadjson.m
loadjson (Line 87)
jsonopt
Function Call
loadjson.m
loadjson (Line 116)
jsonopt
Function Call
loadjson.m
loadjson (Line 117)
jsonopt
Function Call
loadjson.m
loadjson (Line 118)
jsonopt
Function Call
loadjson.m
loadjson (Line 119)
jsonopt
Function Call
loadjson.m
loadjson (Line 120)
jsonopt
Function Call
loadjson.m
loadjson (Line 121)
jsonopt
Function Call
loadjson.m
loadjson (Line 124)
jsonopt
Function Call
loadjson.m
loadjson (Line 128)
jsonopt
Function Call
loadjson.m
loadjson (Line 160)
jsonopt
Function Call
loadjson.m
loadjson (Line 87)
jsonopt
Function Call
loadmsgpack.m
loadmsgpack (Line 34)
jsonopt
Function Call
loadmsgpack.m
loadmsgpack (Line 35)
jsonopt
Function Call
loadmsgpack.m
loadmsgpack (Line 34)
jsonopt
Function Call
loadmsgpack.m
loadmsgpack (Line 35)
jsonopt
Function Call
savebj.m
savebj (Line 152)
jsonopt
Function Call
savebj.m
savebj (Line 153)
jsonopt
Function Call
savebj.m
savebj (Line 154)
jsonopt
Function Call
savebj.m
savebj (Line 155)
jsonopt
Function Call
savebj.m
savebj (Line 156)
jsonopt
Function Call
savebj.m
savebj (Line 157)
jsonopt
Function Call
savebj.m
savebj (Line 158)
jsonopt
Function Call
savebj.m
savebj (Line 159)
jsonopt
Function Call
savebj.m
savebj (Line 160)
jsonopt
Function Call
savebj.m
savebj (Line 161)
jsonopt
Function Call
savebj.m
savebj (Line 163)
jsonopt
Function Call
savebj.m
savebj (Line 164)
jsonopt
Function Call
savebj.m
savebj (Line 167)
jsonopt
Function Call
savebj.m
savebj (Line 228)
jsonopt
Function Call
savebj.m
savebj (Line 254)
jsonopt
Function Call
savebj.m
savebj (Line 260)
jsonopt
Function Call
savebj.m
savebj (Line 262)
jsonopt
Function Call
savebj.m
savebj (Line 263)
jsonopt
Function Call
savebj.m
savebj (Line 265)
jsonopt
Function Call
savebj.m
savebj (Line 152)
jsonopt
Function Call
savebj.m
savebj (Line 153)
jsonopt
Function Call
savebj.m
savebj (Line 154)
jsonopt
Function Call
savebj.m
savebj (Line 155)
jsonopt
Function Call
savebj.m
savebj (Line 156)
jsonopt
Function Call
savebj.m
savebj (Line 157)
jsonopt
Function Call
savebj.m
savebj (Line 158)
jsonopt
Function Call
savebj.m
savebj (Line 159)
jsonopt
Function Call
savebj.m
savebj (Line 160)
jsonopt
Function Call
savebj.m
savebj (Line 161)
jsonopt
Function Call
savebj.m
savebj (Line 163)
jsonopt
Function Call
savebj.m
savebj (Line 164)
jsonopt
Function Call
savebj.m
savebj (Line 167)
jsonopt
Function Call
savebj.m
savebj (Line 228)
jsonopt
Function Call
savebj.m
savebj (Line 254)
jsonopt
Function Call
savebj.m
savebj (Line 260)
jsonopt
Function Call
savebj.m
savebj (Line 262)
jsonopt
Function Call
savebj.m
savebj (Line 263)
jsonopt
Function Call
savebj.m
savebj (Line 265)
jsonopt
Function Call
savejson.m
savejson (Line 142)
jsonopt
Function Call
savejson.m
savejson (Line 143)
jsonopt
Function Call
savejson.m
savejson (Line 144)
jsonopt
Function Call
savejson.m
savejson (Line 145)
jsonopt
Function Call
savejson.m
savejson (Line 146)
jsonopt
Function Call
savejson.m
savejson (Line 147)
jsonopt
Function Call
savejson.m
savejson (Line 148)
jsonopt
Function Call
savejson.m
savejson (Line 149)
jsonopt
Function Call
savejson.m
savejson (Line 150)
jsonopt
Function Call
savejson.m
savejson (Line 151)
jsonopt
Function Call
savejson.m
savejson (Line 152)
jsonopt
Function Call
savejson.m
savejson (Line 153)
jsonopt
Function Call
savejson.m
savejson (Line 154)
jsonopt
Function Call
savejson.m
savejson (Line 155)
jsonopt
Function Call
savejson.m
savejson (Line 156)
jsonopt
Function Call
savejson.m
savejson (Line 157)
jsonopt
Function Call
savejson.m
savejson (Line 161)
jsonopt
Function Call
savejson.m
savejson (Line 187)
jsonopt
Function Call
savejson.m
savejson (Line 222)
jsonopt
Function Call
savejson.m
savejson (Line 228)
jsonopt
Function Call
savejson.m
savejson (Line 230)
jsonopt
Function Call
savejson.m
savejson (Line 231)
jsonopt
Function Call
savejson.m
savejson (Line 233)
jsonopt
Function Call
savejson.m
savejson (Line 236)
jsonopt
Function Call
savejson.m
savejson (Line 142)
jsonopt
Function Call
savejson.m
savejson (Line 143)
jsonopt
Function Call
savejson.m
savejson (Line 144)
jsonopt
Function Call
savejson.m
savejson (Line 145)
jsonopt
Function Call
savejson.m
savejson (Line 146)
jsonopt
Function Call
savejson.m
savejson (Line 147)
jsonopt
Function Call
savejson.m
savejson (Line 148)
jsonopt
Function Call
savejson.m
savejson (Line 149)
jsonopt
Function Call
savejson.m
savejson (Line 150)
jsonopt
Function Call
savejson.m
savejson (Line 151)
jsonopt
Function Call
savejson.m
savejson (Line 152)
jsonopt
Function Call
savejson.m
savejson (Line 153)
jsonopt
Function Call
savejson.m
savejson (Line 154)
jsonopt
Function Call
savejson.m
savejson (Line 155)
jsonopt
Function Call
savejson.m
savejson (Line 156)
jsonopt
Function Call
savejson.m
savejson (Line 157)
jsonopt
Function Call
savejson.m
savejson (Line 161)
jsonopt
Function Call
savejson.m
savejson (Line 187)
jsonopt
Function Call
savejson.m
savejson (Line 222)
jsonopt
Function Call
savejson.m
savejson (Line 228)
jsonopt
Function Call
savejson.m
savejson (Line 230)
jsonopt
Function Call
savejson.m
savejson (Line 231)
jsonopt
Function Call
savejson.m
savejson (Line 233)
jsonopt
Function Call
savejson.m
savejson (Line 236)
jsonopt
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
jsonopt
Toolbox

KEGGview.m

Path
D:\MAGE\dependencies\Rwrappers\KEGGview.m
TypeFunction
Last modified28-Jan-2025 15:43:15
Size (bytes)13480

Required Files

FileImpactedRequiredDependency Type
EnsemblREST.m
findPathIds (Line 227)
EnsemblREST
Function Call
MATLAB2Rconnector.m
KEGGview (Line 214)
MATLAB2Rconnector
Function Call
MATLAB2Rconnector.m
KEGGview (Line 77)
MATLAB2Rconnector
Function Call
createRvec.m
KEGGview (Line 157)
createRvec
Function Call
createRvec.m
KEGGview (Line 182)
createRvec
Function Call
createRvec.m
KEGGview (Line 199)
createRvec
Function Call
createRvec.m
KEGGview (Line 204)
createRvec
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
KEGGview
Toolbox

kfoldLoss

Problems

Impacted Files

FileImpactedRequiredDependency Type
trainCVmodels.m
trainModel (Line 1168)
kfoldLoss
Function Call
trainCVmodels.m
trainModel (Line 1170)
kfoldLoss
Function Call

kfoldPredict

Problems

Impacted Files

FileImpactedRequiredDependency Type
trainCVmodels.m
trainModel (Line 1172)
kfoldPredict
Function Call

ldclump.m

Path
D:\MAGE\source\ldclump.m
TypeFunction
Last modified31-May-2025 14:30:05
Size (bytes)14605

Required Files

FileImpactedRequiredDependency Type
bimreader.m
snptag (Line 293)
bimreader
Function Call
colnames.m
snptag (Line 260)
colnames
Function Call
duplicates.m
snptag (Line 307)
duplicates
Function Call
erro
adjdupP (Line 382)
erro
Function Call
getRandomName.m
ldclump (Line 54)
getRandomName
Function Call
ldclump.m
ldclump (Line 15)
ldclump
Function Argument
natsort.m
ldclump (Line 109)
natsort
Function Call
readGWASfile.m
ldclump (Line 57)
readGWASfile
Function Call
strshare.m
ldclump (Line 111)
strshare
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
ldclump
Toolbox

ldclump.m

Path
D:\MATLAB.dependencies\MAGE\ldclump.m
TypeFunction
Last modified29-May-2025 14:02:56
Size (bytes)24720

Impacted Files

FileImpactedRequiredDependency Type
ldclump.m
ldclump (Line 15)
ldclump
Function Argument
ldclump.m
ldclump (Line 15)
ldclump
Function Argument
manplotter.m
manplotter (Line 147)
ldclump
Function Call

Required Files

FileImpactedRequiredDependency Type
bimreader.m
snptag (Line 293)
bimreader
Function Call
colnames.m
snptag (Line 260)
colnames
Function Call
duplicates.m
snptag (Line 307)
duplicates
Function Call
erro
adjdupP (Line 382)
erro
Function Call
getRandomName.m
ldclump (Line 54)
getRandomName
Function Call
ldclump.m
ldclump (Line 15)
ldclump
Function Argument
natsort.m
ldclump (Line 109)
natsort
Function Call
readGWASfile.m
ldclump (Line 57)
readGWASfile
Function Call
strshare.m
ldclump (Line 111)
strshare
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
ldclump
Toolbox

ldclumpOnline.m

Path
D:\MAGE\source\ldclumpOnline.m
TypeFunction
Last modified10-Feb-2023 14:13:46
Size (bytes)5345

Required Files

FileImpactedRequiredDependency Type
getQCEID.m
ldclumpOnline (Line 71)
getQCEID
Function Call
getbulkgeno.m
ldclumpOnline (Line 105)
getbulkgeno
Function Call
getbulkgeno.m
ldclumpOnline (Line 109)
getbulkgeno
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
ldclumpOnline
Toolbox
Statistics and Machine Learning Toolbox
ldclumpOnline (Line 115)
Function Call

ldclumpPeaks.m

Path
D:\MAGE\source\ldclumpPeaks.m
TypeFunction
Last modified31-May-2025 14:30:41
Size (bytes)6255

Required Files

FileImpactedRequiredDependency Type
colnames.m
peakClump (Line 128)
colnames
Function Call
colnames.m
peakClump (Line 142)
colnames
Function Call
colnames.m
ldclumpPeaks (Line 28)
colnames
Function Call
getInsampleLD.m
peakClump (Line 130)
getInsampleLD
Function Call
getQCEID.m
peakClump (Line 126)
getQCEID
Function Call
mapVariant2gene.m
peakClump (Line 150)
mapVariant2gene
Function Call
natsort.m
ldclumpPeaks (Line 60)
natsort
Function Call
natsort.m
ldclumpPeaks (Line 69)
natsort
Function Call
readGWASfile.m
ldclumpPeaks (Line 22)
readGWASfile
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
ldclumpPeaks
Toolbox
Signal Processing Toolbox
peakClump (Line 105)
Function Call
Statistics and Machine Learning Toolbox
peakClump (Line 126)
Function Call

ldclumpPeaks.m

Path
D:\MATLAB.dependencies\MAGE\ldclumpPeaks.m
TypeFunction
Last modified06-Dec-2024 12:05:00
Size (bytes)6274

Impacted Files

FileImpactedRequiredDependency Type
manplotter.m
manplotter (Line 136)
ldclumpPeaks
Function Call

Required Files

FileImpactedRequiredDependency Type
colnames.m
peakClump (Line 128)
colnames
Function Call
colnames.m
peakClump (Line 142)
colnames
Function Call
colnames.m
ldclumpPeaks (Line 28)
colnames
Function Call
getInsampleLD.m
peakClump (Line 130)
getInsampleLD
Function Call
getQCEID.m
peakClump (Line 126)
getQCEID
Function Call
mapVariant2gene.m
peakClump (Line 150)
mapVariant2gene
Function Call
natsort.m
ldclumpPeaks (Line 60)
natsort
Function Call
natsort.m
ldclumpPeaks (Line 69)
natsort
Function Call
readGWASfile.m
ldclumpPeaks (Line 22)
readGWASfile
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
ldclumpPeaks
Toolbox
Signal Processing Toolbox
peakClump (Line 105)
Function Call
Statistics and Machine Learning Toolbox
peakClump (Line 126)
Function Call

LDexpress.m

Path
D:\MAGE\source\LDexpress.m
TypeFunction
Last modified31-May-2025 14:31:24
Size (bytes)3208

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
LDexpress (Line 49)
MATLAB2Rconnector
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
LDexpress
Toolbox

LDexpress.m

Path
D:\MATLAB.dependencies\MAGE\LDexpress.m
TypeFunction
Last modified23-Dec-2021 17:47:38
Size (bytes)4013

Impacted Files

FileImpactedRequiredDependency Type
mapVariant2gene.m
mapVariant2gene (Line 225)
LDexpress
Function Call
mapVariant2gene.m
mapVariant2gene (Line 232)
LDexpress
Function Call
mapVariant2gene.m
mapVariant2gene (Line 245)
LDexpress
Function Call
mapVariant2gene.m
mapVariant2gene (Line 228)
LDexpress
Function Call
mapVariant2gene.m
mapVariant2gene (Line 235)
LDexpress
Function Call
mapVariant2gene.m
mapVariant2gene (Line 248)
LDexpress
Function Call

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
LDexpress (Line 66)
MATLAB2Rconnector
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
LDexpress
Toolbox

LDlink.m

Path
D:\MAGE\source\LDlink.m
TypeFunction
Last modified31-May-2025 14:31:37
Size (bytes)2631

Required Products

ProductImpactedDependency Type
MATLAB
LDlink
Toolbox

LDlink.m

Path
D:\MATLAB.dependencies\MAGE\LDlink.m
TypeFunction
Last modified20-Jan-2025 14:13:30
Size (bytes)2634

Impacted Files

FileImpactedRequiredDependency Type
genePlotter.m
genePlotter (Line 174)
LDlink
Function Call
genePlotter.m
genePlotter (Line 174)
LDlink
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
LDlink
Toolbox

LDmatrix.m

Path
D:\MAGE\source\LDmatrix.m
TypeFunction
Last modified31-May-2025 14:31:49
Size (bytes)1430

Required Products

ProductImpactedDependency Type
MATLAB
LDmatrix
Toolbox

LDproxy.m

Path
D:\MAGE\source\LDproxy.m
TypeFunction
Last modified31-May-2025 14:31:55
Size (bytes)1797

Required Products

ProductImpactedDependency Type
MATLAB
LDproxy
Toolbox

ldsc.m

Path
D:\MAGE\dependencies\ldsc\ldsc.m
TypeFunction
Last modified31-May-2025 15:49:19
Size (bytes)17203

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
munge_sumstats (Line 264)
bfilereader
Function Call
dos2unix.m
ldsc (Line 164)
dos2unix
Function Call
getRandomName.m
ldsc (Line 160)
getRandomName
Function Call
getRandomName.m
ldsc (Line 246)
getRandomName
Function Call
getRandomName.m
munge_sumstats (Line 263)
getRandomName
Function Call
makeWSLpath.m
ldsc (Line 158)
makeWSLpath
Function Call
makeWSLpath.m
ldsc (Line 159)
makeWSLpath
Function Call
makeWSLpath.m
ldsc (Line 173)
makeWSLpath
Function Call
makeWSLpath.m
ldsc (Line 250)
makeWSLpath
Function Call
makeWSLpath.m
ldsc (Line 254)
makeWSLpath
Function Call
makeWSLpath.m
munge_sumstats (Line 275)
makeWSLpath
Function Call
makeWSLpath.m
munge_sumstats (Line 279)
makeWSLpath
Function Call
makeWSLpath.m
munge_sumstats (Line 287)
makeWSLpath
Function Call
makeWSLpath.m
makeCMD (Line 311)
makeWSLpath
Function Call
runbash.m
ldsc (Line 251)
runbash
Function Call
runbash.m
munge_sumstats (Line 278)
runbash
Function Call
runbash.m
munge_sumstats (Line 288)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
ldsc
Toolbox

LDtrait.m

Path
D:\MAGE\source\LDtrait.m
TypeFunction
Last modified31-May-2025 14:32:03
Size (bytes)1784

Required Products

ProductImpactedDependency Type
MATLAB
LDtrait
Toolbox

liftover.m

Path
D:\MAGE\dependencies\liftOver\liftover.m
TypeFunction
Last modified20-Jan-2025 11:07:52
Size (bytes)9086

Required Files

FileImpactedRequiredDependency Type
EnsemblREST.m
liftover (Line 195)
EnsemblREST
Function Call
EnsemblREST.m
liftover (Line 214)
EnsemblREST
Function Call
MATLAB2Rconnector.m
liftover (Line 93)
MATLAB2Rconnector
Function Call
colnames.m
liftover (Line 104)
colnames
Function Call
colnames.m
liftover (Line 165)
colnames
Function Call
colnames.m
liftover (Line 33)
colnames
Function Call
getRandomName.m
liftover (Line 32)
getRandomName
Function Call
getfilenames.m
liftover (Line 41)
getfilenames
Function Call
liftover.m
liftover (Line 16)
liftover
Function Argument
liftover.m
liftover (Line 23)
liftover
Function Argument
liftover.m
liftover (Line 41)
liftover
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
liftover
Toolbox
Parallel Computing Toolbox
liftover (Line 95)
Function Call

liftover.m

Path
D:\MATLAB.dependencies\MAGE\liftOver\liftover.m
TypeFunction
Last modified20-Jan-2025 11:07:52
Size (bytes)9086

Impacted Files

FileImpactedRequiredDependency Type
coloc.m
coloc (Line 120)
liftover
Function Call
fetchReplicationGWAS.m
fetchReplicationGWAS (Line 30)
liftover
Function Call
liftover.m
liftover (Line 16)
liftover
Function Argument
liftover.m
liftover (Line 23)
liftover
Function Argument
liftover.m
liftover (Line 41)
liftover
Function Argument
liftover.m
liftover (Line 16)
liftover
Function Argument
liftover.m
liftover (Line 23)
liftover
Function Argument
liftover.m
liftover (Line 41)
liftover
Function Argument

Required Files

FileImpactedRequiredDependency Type
EnsemblREST.m
liftover (Line 195)
EnsemblREST
Function Call
EnsemblREST.m
liftover (Line 214)
EnsemblREST
Function Call
MATLAB2Rconnector.m
liftover (Line 93)
MATLAB2Rconnector
Function Call
colnames.m
liftover (Line 104)
colnames
Function Call
colnames.m
liftover (Line 165)
colnames
Function Call
colnames.m
liftover (Line 33)
colnames
Function Call
getRandomName.m
liftover (Line 32)
getRandomName
Function Call
getfilenames.m
liftover (Line 41)
getfilenames
Function Call
liftover.m
liftover (Line 16)
liftover
Function Argument
liftover.m
liftover (Line 23)
liftover
Function Argument
liftover.m
liftover (Line 41)
liftover
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
liftover
Toolbox
Parallel Computing Toolbox
liftover (Line 95)
Function Call

line2arrow.m

Path
D:\MAGE\dependencies\line2arrow\line2arrow\line2arrow.m
TypeFunction
Last modified24-Sep-2021 02:02:30
Size (bytes)5548

Required Files

FileImpactedRequiredDependency Type
axescoord2figurecoord.m
addarrow (Line 144)
axescoord2figurecoord
Function Call
parsepv.m
addarrow (Line 172)
parsepv
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
line2arrow
Toolbox

line2arrow.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\line2arrow\line2arrow\line2arrow.m
TypeFunction
Last modified24-Sep-2021 02:02:30
Size (bytes)5548

Impacted Files

FileImpactedRequiredDependency Type
effNetPlotter.m
effNetPlotter (Line 496)
line2arrow
Function Call
gNetworkPlot.m
gNetworkPlot (Line 344)
line2arrow
Function Call

Required Files

FileImpactedRequiredDependency Type
axescoord2figurecoord.m
addarrow (Line 144)
axescoord2figurecoord
Function Call
parsepv.m
addarrow (Line 172)
parsepv
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
line2arrow
Toolbox

linewrap

Problems

Impacted Files

FileImpactedRequiredDependency Type
processManager.m
printStream (Line 589)
linewrap
Function Call
processManager.m
printStream (Line 591)
linewrap
Function Call
processManager.m
printStream (Line 589)
linewrap
Function Call
processManager.m
printStream (Line 591)
linewrap
Function Call

loadbj.m

Path
D:\MAGE\dependencies\JSONLab\loadbj.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)14473

Required Files

FileImpactedRequiredDependency Type
encodevarname.m
parse_object (Line 392)
encodevarname
Function Call
jdatadecode.m
loadbj (Line 123)
jdatadecode
Function Call
jsonopt.m
loadbj (Line 122)
jsonopt
Function Call
jsonopt.m
loadbj (Line 80)
jsonopt
Function Call
jsonopt.m
loadbj (Line 81)
jsonopt
Function Call
jsonopt.m
loadbj (Line 82)
jsonopt
Function Call
jsonopt.m
loadbj (Line 83)
jsonopt
Function Call
jsonopt.m
loadbj (Line 86)
jsonopt
Function Call
jsonopt.m
loadbj (Line 88)
jsonopt
Function Call
match_bracket.m
parse_array (Line 181)
match_bracket
Function Call
varargin2struct.m
loadbj (Line 78)
varargin2struct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
loadbj
Toolbox

loadbj.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\loadbj.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)14473

Impacted Files

FileImpactedRequiredDependency Type
jload.m
jload (Line 63)
loadbj
Function Call
loadubjson.m
loadubjson (Line 39)
loadbj
Function Call

Required Files

FileImpactedRequiredDependency Type
encodevarname.m
parse_object (Line 392)
encodevarname
Function Call
jdatadecode.m
loadbj (Line 123)
jdatadecode
Function Call
jsonopt.m
loadbj (Line 122)
jsonopt
Function Call
jsonopt.m
loadbj (Line 80)
jsonopt
Function Call
jsonopt.m
loadbj (Line 81)
jsonopt
Function Call
jsonopt.m
loadbj (Line 82)
jsonopt
Function Call
jsonopt.m
loadbj (Line 83)
jsonopt
Function Call
jsonopt.m
loadbj (Line 86)
jsonopt
Function Call
jsonopt.m
loadbj (Line 88)
jsonopt
Function Call
match_bracket.m
parse_array (Line 181)
match_bracket
Function Call
varargin2struct.m
loadbj (Line 78)
varargin2struct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
loadbj
Toolbox

loadjson.m

Path
D:\MAGE\dependencies\JSONLab\loadjson.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)21604

Required Files

FileImpactedRequiredDependency Type
encodevarname.m
parse_object (Line 471)
encodevarname
Function Call
fast_match_bracket.m
parse_array (Line 188)
fast_match_bracket
Function Call
inStr
parse_array (Line 219)
inStr
Function Call
inStr
parse_array (Line 246)
inStr
Function Call
jdatadecode.m
loadjson (Line 161)
jdatadecode
Function Call
jsonopt.m
loadjson (Line 116)
jsonopt
Function Call
jsonopt.m
loadjson (Line 117)
jsonopt
Function Call
jsonopt.m
loadjson (Line 118)
jsonopt
Function Call
jsonopt.m
loadjson (Line 119)
jsonopt
Function Call
jsonopt.m
loadjson (Line 120)
jsonopt
Function Call
jsonopt.m
loadjson (Line 121)
jsonopt
Function Call
jsonopt.m
loadjson (Line 124)
jsonopt
Function Call
jsonopt.m
loadjson (Line 128)
jsonopt
Function Call
jsonopt.m
loadjson (Line 160)
jsonopt
Function Call
jsonopt.m
loadjson (Line 87)
jsonopt
Function Call
match_bracket.m
parse2darray (Line 536)
match_bracket
Function Call
nestbracket2dim.m
parse_array (Line 230)
nestbracket2dim
Function Call
varargin2struct.m
loadjson (Line 81)
varargin2struct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
loadjson
Toolbox

loadjson.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\loadjson.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)21604

Impacted Files

FileImpactedRequiredDependency Type
jload.m
jload (Line 65)
loadjson
Function Call
jload.m
jload (Line 67)
loadjson
Function Call

Required Files

FileImpactedRequiredDependency Type
encodevarname.m
parse_object (Line 471)
encodevarname
Function Call
fast_match_bracket.m
parse_array (Line 188)
fast_match_bracket
Function Call
inStr
parse_array (Line 219)
inStr
Function Call
inStr
parse_array (Line 246)
inStr
Function Call
jdatadecode.m
loadjson (Line 161)
jdatadecode
Function Call
jsonopt.m
loadjson (Line 116)
jsonopt
Function Call
jsonopt.m
loadjson (Line 117)
jsonopt
Function Call
jsonopt.m
loadjson (Line 118)
jsonopt
Function Call
jsonopt.m
loadjson (Line 119)
jsonopt
Function Call
jsonopt.m
loadjson (Line 120)
jsonopt
Function Call
jsonopt.m
loadjson (Line 121)
jsonopt
Function Call
jsonopt.m
loadjson (Line 124)
jsonopt
Function Call
jsonopt.m
loadjson (Line 128)
jsonopt
Function Call
jsonopt.m
loadjson (Line 160)
jsonopt
Function Call
jsonopt.m
loadjson (Line 87)
jsonopt
Function Call
match_bracket.m
parse2darray (Line 536)
match_bracket
Function Call
nestbracket2dim.m
parse_array (Line 230)
nestbracket2dim
Function Call
varargin2struct.m
loadjson (Line 81)
varargin2struct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
loadjson
Toolbox

loadmsgpack.m

Path
D:\MAGE\dependencies\JSONLab\loadmsgpack.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)8705

Required Files

FileImpactedRequiredDependency Type
encodevarname.m
parsemap (Line 259)
encodevarname
Function Call
isoctavemesh.m
parsestring (Line 202)
isoctavemesh
Function Call
jdatadecode.m
loadmsgpack (Line 50)
jdatadecode
Function Call
jdatadecode.m
loadmsgpack (Line 52)
jdatadecode
Function Call
jsonopt.m
loadmsgpack (Line 34)
jsonopt
Function Call
jsonopt.m
loadmsgpack (Line 35)
jsonopt
Function Call
varargin2struct.m
loadmsgpack (Line 33)
varargin2struct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
loadmsgpack
Toolbox

loadmsgpack.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\loadmsgpack.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)8705

Impacted Files

FileImpactedRequiredDependency Type
jload.m
jload (Line 69)
loadmsgpack
Function Call

Required Files

FileImpactedRequiredDependency Type
encodevarname.m
parsemap (Line 259)
encodevarname
Function Call
isoctavemesh.m
parsestring (Line 202)
isoctavemesh
Function Call
jdatadecode.m
loadmsgpack (Line 50)
jdatadecode
Function Call
jdatadecode.m
loadmsgpack (Line 52)
jdatadecode
Function Call
jsonopt.m
loadmsgpack (Line 34)
jsonopt
Function Call
jsonopt.m
loadmsgpack (Line 35)
jsonopt
Function Call
varargin2struct.m
loadmsgpack (Line 33)
varargin2struct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
loadmsgpack
Toolbox

loadubjson.m

Path
D:\MAGE\dependencies\JSONLab\loadubjson.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1368

Required Files

FileImpactedRequiredDependency Type
loadbj.m
loadubjson (Line 39)
loadbj
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
loadubjson
Toolbox

lrtest.m

Path
D:\MAGE\source\lrtest.m
TypeFunction
Last modified15-Apr-2024 10:29:48
Size (bytes)928

Required Files

FileImpactedRequiredDependency Type
chi2pval.m
lrtest (Line 15)
chi2pval
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
lrtest
Toolbox

lz4decode.m

Path
D:\MAGE\dependencies\JSONLab\lz4decode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1449

Required Files

FileImpactedRequiredDependency Type
zmat
lz4decode (Line 37)
zmat
Function Call
zmat
lz4decode (Line 39)
zmat
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
lz4decode
Toolbox

lz4encode.m

Path
D:\MAGE\dependencies\JSONLab\lz4encode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1156

Required Files

FileImpactedRequiredDependency Type
zmat
lz4encode (Line 35)
zmat
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
lz4encode
Toolbox

lz4hcdecode.m

Path
D:\MAGE\dependencies\JSONLab\lz4hcdecode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1467

Required Files

FileImpactedRequiredDependency Type
zmat
lz4hcdecode (Line 37)
zmat
Function Call
zmat
lz4hcdecode (Line 39)
zmat
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
lz4hcdecode
Toolbox

lz4hcencode.m

Path
D:\MAGE\dependencies\JSONLab\lz4hcencode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1170

Required Files

FileImpactedRequiredDependency Type
zmat
lz4hcencode (Line 35)
zmat
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
lz4hcencode
Toolbox

lzipdecode.m

Path
D:\MAGE\dependencies\JSONLab\lzipdecode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1458

Required Files

FileImpactedRequiredDependency Type
zmat
lzipdecode (Line 37)
zmat
Function Call
zmat
lzipdecode (Line 39)
zmat
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
lzipdecode
Toolbox

lzipencode.m

Path
D:\MAGE\dependencies\JSONLab\lzipencode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1163

Required Files

FileImpactedRequiredDependency Type
zmat
lzipencode (Line 35)
zmat
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
lzipencode
Toolbox

lzmadecode.m

Path
D:\MAGE\dependencies\JSONLab\lzmadecode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1458

Required Files

FileImpactedRequiredDependency Type
zmat
lzmadecode (Line 37)
zmat
Function Call
zmat
lzmadecode (Line 39)
zmat
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
lzmadecode
Toolbox

lzmaencode.m

Path
D:\MAGE\dependencies\JSONLab\lzmaencode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1163

Required Files

FileImpactedRequiredDependency Type
zmat
lzmaencode (Line 35)
zmat
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
lzmaencode
Toolbox

makeWSLpath.m

Path
D:\MAGE\source\makeWSLpath.m
TypeFunction
Last modified06-Jun-2022 10:40:46
Size (bytes)1326

Required Products

ProductImpactedDependency Type
MATLAB
makeWSLpath
Toolbox

makeWSLpath.m

Path
D:\MATLAB.dependencies\MAGE\makeWSLpath.m
TypeFunction
Last modified06-Jun-2022 10:40:46
Size (bytes)1326

Impacted Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
MATLAB2Rconnector (Line 32)
makeWSLpath
Function Call
MATLAB2Rconnector.m
MATLAB2Rconnector (Line 32)
makeWSLpath
Function Call
SBayesRC.m
SBayesRC (Line 112)
makeWSLpath
Function Call
SBayesRC.m
SBayesRC (Line 125)
makeWSLpath
Function Call
SBayesRC.m
SBayesRC (Line 147)
makeWSLpath
Function Call
SBayesRC.m
SBayesRC (Line 149)
makeWSLpath
Function Call
SBayesRC.m
SBayesRC (Line 97)
makeWSLpath
Function Call
SBayesRC.m
SBayesRC (Line 98)
makeWSLpath
Function Call
SBayesRC.m
SBayesRC (Line 99)
makeWSLpath
Function Call
SBayesRC.m
SBayesRC (Line 112)
makeWSLpath
Function Call
SBayesRC.m
SBayesRC (Line 125)
makeWSLpath
Function Call
SBayesRC.m
SBayesRC (Line 147)
makeWSLpath
Function Call
SBayesRC.m
SBayesRC (Line 149)
makeWSLpath
Function Call
SBayesRC.m
SBayesRC (Line 97)
makeWSLpath
Function Call
SBayesRC.m
SBayesRC (Line 98)
makeWSLpath
Function Call
SBayesRC.m
SBayesRC (Line 99)
makeWSLpath
Function Call
addIDtoGWASfile.m
addIDtoGWASfile (Line 33)
makeWSLpath
Function Call
addIDtoGWASfile.m
addIDtoGWASfile (Line 46)
makeWSLpath
Function Call
bcftools.m
bcftools (Line 15)
makeWSLpath
Function Call
bgenix.m
bgenix (Line 24)
makeWSLpath
Function Call
bgenix.m
bgenix (Line 35)
makeWSLpath
Function Call
bgenix.m
bgenix (Line 24)
makeWSLpath
Function Call
bgenix.m
bgenix (Line 35)
makeWSLpath
Function Call
call_regenie.m
call_regenie (Line 486)
makeWSLpath
Function Call
call_regenie.m
call_regenie (Line 486)
makeWSLpath
Function Call
changeColnames.m
changeColnames (Line 42)
makeWSLpath
Function Call
changeColnames.m
changeColnames (Line 68)
makeWSLpath
Function Call
changeColnames.m
changeColnames (Line 85)
makeWSLpath
Function Call
changeColnames.m
changeColnames (Line 42)
makeWSLpath
Function Call
changeColnames.m
changeColnames (Line 68)
makeWSLpath
Function Call
changeColnames.m
changeColnames (Line 85)
makeWSLpath
Function Call
dos2unix.m
dos2unix (Line 20)
makeWSLpath
Function Call
dos2unix.m
dos2unix (Line 22)
makeWSLpath
Function Call
dos2unix.m
mustBeUnixFile (Line 32)
makeWSLpath
Function Call
dos2unix.m
checkCR (Line 52)
makeWSLpath
Function Call
dos2unix.m
dos2unix (Line 20)
makeWSLpath
Function Call
dos2unix.m
dos2unix (Line 22)
makeWSLpath
Function Call
dos2unix.m
mustBeUnixFile (Line 32)
makeWSLpath
Function Call
dos2unix.m
checkCR (Line 52)
makeWSLpath
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 209)
makeWSLpath
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 411)
makeWSLpath
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 209)
makeWSLpath
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 411)
makeWSLpath
Function Call
fastWriteTable.m
fastWriteTable (Line 38)
makeWSLpath
Function Call
fastWriteTable.m
fastWriteTable (Line 43)
makeWSLpath
Function Call
fastWriteTable.m
fastWriteTable (Line 44)
makeWSLpath
Function Call
fastWriteTable.m
fastWriteTable (Line 38)
makeWSLpath
Function Call
fastWriteTable.m
fastWriteTable (Line 43)
makeWSLpath
Function Call
fastWriteTable.m
fastWriteTable (Line 44)
makeWSLpath
Function Call
filterFileRows.m
filterFileRows (Line 46)
makeWSLpath
Function Call
filterFileRows.m
filterFileRows (Line 46)
makeWSLpath
Function Call
filterline.m
filterline (Line 15)
makeWSLpath
Function Call
filterline.m
filterline (Line 40)
makeWSLpath
Function Call
filterline.m
filterline (Line 41)
makeWSLpath
Function Call
filterline.m
filterline (Line 42)
makeWSLpath
Function Call
filterline.m
filterline (Line 15)
makeWSLpath
Function Call
filterline.m
filterline (Line 40)
makeWSLpath
Function Call
filterline.m
filterline (Line 41)
makeWSLpath
Function Call
filterline.m
filterline (Line 42)
makeWSLpath
Function Call
flashpca.m
flashpca (Line 13)
makeWSLpath
Function Call
flashpca.m
flashpca (Line 13)
makeWSLpath
Function Call
gcta.m
gcta (Line 142)
makeWSLpath
Function Call
gcta.m
gcta (Line 143)
makeWSLpath
Function Call
gcta.m
gcta (Line 163)
makeWSLpath
Function Call
gcta.m
gcta (Line 194)
makeWSLpath
Function Call
gcta.m
gcta (Line 197)
makeWSLpath
Function Call
gcta.m
gcta (Line 142)
makeWSLpath
Function Call
gcta.m
gcta (Line 143)
makeWSLpath
Function Call
gcta.m
gcta (Line 163)
makeWSLpath
Function Call
gcta.m
gcta (Line 194)
makeWSLpath
Function Call
gcta.m
gcta (Line 197)
makeWSLpath
Function Call
getUKBdictionary.m
getUKBdictionary (Line 67)
makeWSLpath
Function Call
getUKBdictionary.m
getUKBdictionary (Line 67)
makeWSLpath
Function Call
gwasrunner.m
call_regenie_in (Line 2470)
makeWSLpath
Function Call
gwasrunner.m
readPredFiles (Line 4552)
makeWSLpath
Function Call
gwasrunner.m
call_regenie_in (Line 2470)
makeWSLpath
Function Call
gwasrunner.m
readPredFiles (Line 4552)
makeWSLpath
Function Call
joinFileCols.m
joinFileCols (Line 42)
makeWSLpath
Function Call
joinFileCols.m
joinFileCols (Line 49)
makeWSLpath
Function Call
joinFileCols.m
joinFileCols (Line 42)
makeWSLpath
Function Call
joinFileCols.m
joinFileCols (Line 49)
makeWSLpath
Function Call
ldsc.m
ldsc (Line 158)
makeWSLpath
Function Call
ldsc.m
ldsc (Line 159)
makeWSLpath
Function Call
ldsc.m
ldsc (Line 173)
makeWSLpath
Function Call
ldsc.m
ldsc (Line 250)
makeWSLpath
Function Call
ldsc.m
ldsc (Line 254)
makeWSLpath
Function Call
ldsc.m
munge_sumstats (Line 275)
makeWSLpath
Function Call
ldsc.m
munge_sumstats (Line 279)
makeWSLpath
Function Call
ldsc.m
munge_sumstats (Line 287)
makeWSLpath
Function Call
ldsc.m
makeCMD (Line 311)
makeWSLpath
Function Call
mergeFiles.m
mergeFiles (Line 24)
makeWSLpath
Function Call
mergeFiles.m
mergeFiles (Line 35)
makeWSLpath
Function Call
mergeFiles.m
mergeFiles (Line 24)
makeWSLpath
Function Call
mergeFiles.m
mergeFiles (Line 35)
makeWSLpath
Function Call
mergeStatFiles.m
mergeStatFiles (Line 17)
makeWSLpath
Function Call
mergeStatFiles.m
mergeStatFiles (Line 18)
makeWSLpath
Function Call
mergeStatFiles.m
mergeStatFiles (Line 17)
makeWSLpath
Function Call
mergeStatFiles.m
mergeStatFiles (Line 18)
makeWSLpath
Function Call
metal.m
metal (Line 100)
makeWSLpath
Function Call
metal.m
metal (Line 117)
makeWSLpath
Function Call
metal.m
metal (Line 118)
makeWSLpath
Function Call
metal.m
metal (Line 149)
makeWSLpath
Function Call
metal.m
metal (Line 157)
makeWSLpath
Function Call
metal.m
metal (Line 158)
makeWSLpath
Function Call
metal.m
metal (Line 100)
makeWSLpath
Function Call
metal.m
metal (Line 117)
makeWSLpath
Function Call
metal.m
metal (Line 118)
makeWSLpath
Function Call
metal.m
metal (Line 149)
makeWSLpath
Function Call
metal.m
metal (Line 157)
makeWSLpath
Function Call
metal.m
metal (Line 158)
makeWSLpath
Function Call
mtag.m
munge_sumstats (Line 140)
makeWSLpath
Function Call
mtag.m
munge_sumstats (Line 151)
makeWSLpath
Function Call
mtag.m
munge_sumstats (Line 163)
makeWSLpath
Function Call
mtag.m
munge_sumstats (Line 169)
makeWSLpath
Function Call
mtag.m
makeCMD (Line 199)
makeWSLpath
Function Call
mtag.m
mtag (Line 83)
makeWSLpath
Function Call
mtag.m
munge_sumstats (Line 140)
makeWSLpath
Function Call
mtag.m
munge_sumstats (Line 151)
makeWSLpath
Function Call
mtag.m
munge_sumstats (Line 163)
makeWSLpath
Function Call
mtag.m
munge_sumstats (Line 169)
makeWSLpath
Function Call
mtag.m
makeCMD (Line 199)
makeWSLpath
Function Call
mtag.m
mtag (Line 83)
makeWSLpath
Function Call
polyfun.m
polyfun (Line 151)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 217)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 218)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 228)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 229)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 230)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 239)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 240)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 255)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 256)
makeWSLpath
Function Call
polyfun.m
finemapper (Line 272)
makeWSLpath
Function Call
polyfun.m
finemapper (Line 273)
makeWSLpath
Function Call
polyfun.m
finemapper (Line 342)
makeWSLpath
Function Call
polyfun.m
finemapper (Line 355)
makeWSLpath
Function Call
polyfun.m
finemapper (Line 389)
makeWSLpath
Function Call
polyfun.m
finemapper (Line 436)
makeWSLpath
Function Call
polyfun.m
prunesumstat (Line 657)
makeWSLpath
Function Call
polyfun.m
polyfun (Line 75)
makeWSLpath
Function Call
polyfun.m
polyfun (Line 76)
makeWSLpath
Function Call
polyfun.m
polyfun (Line 77)
makeWSLpath
Function Call
polyfun.m
polyfun (Line 80)
makeWSLpath
Function Call
polyfun.m
polyfun (Line 81)
makeWSLpath
Function Call
polyfun.m
polyfun (Line 151)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 217)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 218)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 228)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 229)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 230)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 239)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 240)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 255)
makeWSLpath
Function Call
polyfun.m
compPrior (Line 256)
makeWSLpath
Function Call
polyfun.m
finemapper (Line 272)
makeWSLpath
Function Call
polyfun.m
finemapper (Line 273)
makeWSLpath
Function Call
polyfun.m
finemapper (Line 342)
makeWSLpath
Function Call
polyfun.m
finemapper (Line 355)
makeWSLpath
Function Call
polyfun.m
finemapper (Line 389)
makeWSLpath
Function Call
polyfun.m
finemapper (Line 436)
makeWSLpath
Function Call
polyfun.m
prunesumstat (Line 657)
makeWSLpath
Function Call
polyfun.m
polyfun (Line 75)
makeWSLpath
Function Call
polyfun.m
polyfun (Line 76)
makeWSLpath
Function Call
polyfun.m
polyfun (Line 77)
makeWSLpath
Function Call
polyfun.m
polyfun (Line 80)
makeWSLpath
Function Call
polyfun.m
polyfun (Line 81)
makeWSLpath
Function Call
pops.m
pops (Line 37)
makeWSLpath
Function Call
pops.m
pops (Line 37)
makeWSLpath
Function Call
qctool.m
qctool (Line 15)
makeWSLpath
Function Call
qctool.m
qctool (Line 15)
makeWSLpath
Function Call
readvcf.m
readvcf (Line 37)
makeWSLpath
Function Call
readvcf.m
readvcf (Line 45)
makeWSLpath
Function Call
readvcf.m
readvcf (Line 59)
makeWSLpath
Function Call
readvcf.m
readvcf (Line 63)
makeWSLpath
Function Call
regenie.m
regenie (Line 118)
makeWSLpath
Function Call
regenie.m
regenie (Line 125)
makeWSLpath
Function Call
regenie.m
regenie (Line 211)
makeWSLpath
Function Call
regenie.m
regenie (Line 118)
makeWSLpath
Function Call
regenie.m
regenie (Line 125)
makeWSLpath
Function Call
regenie.m
regenie (Line 211)
makeWSLpath
Function Call
runVEP.m
runVEP (Line 46)
makeWSLpath
Function Call
runVEP.m
runVEP (Line 49)
makeWSLpath
Function Call
runVEP.m
runVEP (Line 95)
makeWSLpath
Function Call
runVEP.m
runVEP (Line 96)
makeWSLpath
Function Call
runbash.m
runbash (Line 27)
makeWSLpath
Function Call
runbash.m
runbash (Line 27)
makeWSLpath
Function Call
ss2fuma.m
ss2fuma (Line 51)
makeWSLpath
Function Call
ss2fuma.m
ss2fuma (Line 69)
makeWSLpath
Function Call
ss2fuma.m
ss2fuma (Line 72)
makeWSLpath
Function Call
ss2fuma.m
ss2fuma (Line 73)
makeWSLpath
Function Call
ss2fuma.m
ss2fuma (Line 51)
makeWSLpath
Function Call
ss2fuma.m
ss2fuma (Line 69)
makeWSLpath
Function Call
ss2fuma.m
ss2fuma (Line 72)
makeWSLpath
Function Call
ss2fuma.m
ss2fuma (Line 73)
makeWSLpath
Function Call
tabix.m
tabix (Line 74)
makeWSLpath
Function Call
tabix.m
tabix (Line 86)
makeWSLpath
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
makeWSLpath
Toolbox

manplotter.m

Path
D:\MAGE\source\manplotter.m
TypeFunction
Last modified31-May-2025 14:34:01
Size (bytes)16663

Required Files

FileImpactedRequiredDependency Type
getfilenames.m
manplotter (Line 142)
getfilenames
Function Call
getfilenames.m
manplotter (Line 144)
getfilenames
Function Call
ldclump.m
manplotter (Line 147)
ldclump
Function Call
ldclumpPeaks.m
manplotter (Line 136)
ldclumpPeaks
Function Call
mapVariant2gene.m
manplotter (Line 149)
mapVariant2gene
Function Call
natsort.m
manplotter (Line 120)
natsort
Function Call
natsort.m
manplotter (Line 191)
natsort
Function Call
readGWASfile.m
manplotter (Line 76)
readGWASfile
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
manplotter
Toolbox

mapVariant2gene.m

Path
D:\MAGE\source\mapVariant2gene.m
TypeFunction
Last modified31-May-2025 14:34:34
Size (bytes)10706

Required Files

FileImpactedRequiredDependency Type
EnsemblREST.m
mapVariant2gene (Line 107)
EnsemblREST
Function Call
EnsemblREST.m
mapVariant2gene (Line 115)
EnsemblREST
Function Call
EnsemblREST.m
mapVariant2gene (Line 154)
EnsemblREST
Function Call
EnsemblREST.m
mapVariant2gene (Line 223)
EnsemblREST
Function Call
EnsemblREST.m
mapVariant2gene (Line 230)
EnsemblREST
Function Call
EnsemblREST.m
mapVariant2gene (Line 242)
EnsemblREST
Function Call
EnsemblREST.m
mapVariant2gene (Line 40)
EnsemblREST
Function Call
LDexpress.m
mapVariant2gene (Line 225)
LDexpress
Function Call
LDexpress.m
mapVariant2gene (Line 232)
LDexpress
Function Call
LDexpress.m
mapVariant2gene (Line 245)
LDexpress
Function Call
bgireader.m
mapVariant2gene (Line 54)
bgireader
Function Call
callVEP.m
mapVariant2gene (Line 71)
callVEP
Function Call
colnames.m
mapVariant2gene (Line 84)
colnames
Function Call
colnames.m
mapVariant2gene (Line 91)
colnames
Function Call
duplicates.m
mapVariant2gene (Line 96)
duplicates
Function Call
gnomad.m
mapVariant2gene (Line 182)
gnomad
Function Call
gnomad.m
mapVariant2gene (Line 186)
gnomad
Function Call
mapVariant2gene.m
mapVariant2gene (Line 21)
mapVariant2gene
Function Argument
mapVariant2gene.m
mapVariant2gene (Line 22)
mapVariant2gene
Function Argument
opentargets.m
mapVariant2gene (Line 160)
opentargets
Function Call
opentargets.m
mapVariant2gene (Line 171)
opentargets
Function Call
opentargets.m
mapVariant2gene (Line 194)
opentargets
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
mapVariant2gene
Toolbox

mapVariant2gene.m

Path
D:\MATLAB.dependencies\MAGE\mapVariant2gene.m
TypeFunction
Last modified01-Nov-2024 10:33:30
Size (bytes)11035

Impacted Files

FileImpactedRequiredDependency Type
ldclumpPeaks.m
peakClump (Line 150)
mapVariant2gene
Function Call
ldclumpPeaks.m
peakClump (Line 150)
mapVariant2gene
Function Call
manplotter.m
manplotter (Line 149)
mapVariant2gene
Function Call
mapVariant2gene.m
mapVariant2gene (Line 21)
mapVariant2gene
Function Argument
mapVariant2gene.m
mapVariant2gene (Line 22)
mapVariant2gene
Function Argument
mapVariant2gene.m
mapVariant2gene (Line 21)
mapVariant2gene
Function Argument
mapVariant2gene.m
mapVariant2gene (Line 22)
mapVariant2gene
Function Argument
regionalPlotter.m
regionalPlotter (Line 88)
mapVariant2gene
Function Call

Required Files

FileImpactedRequiredDependency Type
EnsemblREST.m
mapVariant2gene (Line 107)
EnsemblREST
Function Call
EnsemblREST.m
mapVariant2gene (Line 121)
EnsemblREST
Function Call
EnsemblREST.m
mapVariant2gene (Line 157)
EnsemblREST
Function Call
EnsemblREST.m
mapVariant2gene (Line 226)
EnsemblREST
Function Call
EnsemblREST.m
mapVariant2gene (Line 233)
EnsemblREST
Function Call
EnsemblREST.m
mapVariant2gene (Line 245)
EnsemblREST
Function Call
EnsemblREST.m
mapVariant2gene (Line 40)
EnsemblREST
Function Call
LDexpress.m
mapVariant2gene (Line 228)
LDexpress
Function Call
LDexpress.m
mapVariant2gene (Line 235)
LDexpress
Function Call
LDexpress.m
mapVariant2gene (Line 248)
LDexpress
Function Call
bgireader.m
mapVariant2gene (Line 54)
bgireader
Function Call
callVEP.m
mapVariant2gene (Line 71)
callVEP
Function Call
colnames.m
mapVariant2gene (Line 84)
colnames
Function Call
colnames.m
mapVariant2gene (Line 91)
colnames
Function Call
duplicates.m
mapVariant2gene (Line 96)
duplicates
Function Call
gnomad.m
mapVariant2gene (Line 185)
gnomad
Function Call
gnomad.m
mapVariant2gene (Line 189)
gnomad
Function Call
mapVariant2gene.m
mapVariant2gene (Line 21)
mapVariant2gene
Function Argument
mapVariant2gene.m
mapVariant2gene (Line 22)
mapVariant2gene
Function Argument
opentargets.m
mapVariant2gene (Line 163)
opentargets
Function Call
opentargets.m
mapVariant2gene (Line 174)
opentargets
Function Call
opentargets.m
mapVariant2gene (Line 197)
opentargets
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
mapVariant2gene
Toolbox

match_bracket.m

Path
D:\MAGE\dependencies\JSONLab\match_bracket.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1979

Required Products

ProductImpactedDependency Type
MATLAB
match_bracket
Toolbox

match_bracket.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\match_bracket.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1979

Impacted Files

FileImpactedRequiredDependency Type
loadbj.m
parse_array (Line 181)
match_bracket
Function Call
loadbj.m
parse_array (Line 181)
match_bracket
Function Call
loadjson.m
parse2darray (Line 536)
match_bracket
Function Call
loadjson.m
parse2darray (Line 536)
match_bracket
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
match_bracket
Toolbox

MATLAB2Rconnector.m

Path
D:\MAGE\source\MATLAB2Rconnector.m
TypeFunction
Last modified31-May-2025 14:35:17
Size (bytes)4570

Required Files

FileImpactedRequiredDependency Type
dos2unix.m
MATLAB2Rconnector (Line 33)
dos2unix
Function Call
makeWSLpath.m
MATLAB2Rconnector (Line 32)
makeWSLpath
Function Call
natsort.m
MATLAB2Rconnector (Line 43)
natsort
Function Call
processManager.m
MATLAB2Rconnector (Line 63)
processManager
Function Call
runbash.m
MATLAB2Rconnector (Line 34)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
MATLAB2Rconnector
Toolbox

MATLAB2Rconnector.m

Path
D:\MATLAB.dependencies\MAGE\MATLAB2Rconnector.m
TypeFunction
Last modified10-Jul-2024 15:17:26
Size (bytes)5162

Impacted Files

FileImpactedRequiredDependency Type
EnhancedVolcano.m
EnhancedVolcano (Line 86)
MATLAB2Rconnector
Function Call
KEGGview.m
KEGGview (Line 214)
MATLAB2Rconnector
Function Call
KEGGview.m
KEGGview (Line 77)
MATLAB2Rconnector
Function Call
LDexpress.m
LDexpress (Line 49)
MATLAB2Rconnector
Function Call
LDexpress.m
LDexpress (Line 66)
MATLAB2Rconnector
Function Call
MRlap.m
MRlap (Line 181)
MATLAB2Rconnector
Function Call
MRrunner.m
MRrunner (Line 325)
MATLAB2Rconnector
Function Call
Rpam.m
Rpam (Line 159)
MATLAB2Rconnector
Function Call
biomaRt.m
biomaRt (Line 38)
MATLAB2Rconnector
Function Call
coloc.m
callColoc (Line 835)
MATLAB2Rconnector
Function Call
delongtest.m
delongtest (Line 40)
MATLAB2Rconnector
Function Call
enrichr.m
enrichr (Line 56)
MATLAB2Rconnector
Function Call
enrichr.m
getEnrichrDB (Line 84)
MATLAB2Rconnector
Function Call
enrichr.m
enrichr (Line 56)
MATLAB2Rconnector
Function Call
enrichr.m
getEnrichrDB (Line 84)
MATLAB2Rconnector
Function Call
fitSurvCox.m
fitSurvCox (Line 645)
MATLAB2Rconnector
Function Call
fitSurvCox.m
fitSurvCox (Line 645)
MATLAB2Rconnector
Function Call
gcorrplot.m
gcorrplot (Line 206)
MATLAB2Rconnector
Function Call
getRfuncArgs.m
getRfuncArgs (Line 22)
MATLAB2Rconnector
Function Call
getRfuncArgs.m
getRfuncArgs (Line 22)
MATLAB2Rconnector
Function Call
ggvenn.m
ggvenn (Line 55)
MATLAB2Rconnector
Function Call
gwasCaller.m
makeReport (Line 1037)
MATLAB2Rconnector
Function Call
gwasrunner.m
logistf (Line 3069)
MATLAB2Rconnector
Function Call
gwasrunner.m
callSKAT (Line 4091)
MATLAB2Rconnector
Function Call
gwasrunner.m
logistf (Line 3069)
MATLAB2Rconnector
Function Call
gwasrunner.m
callSKAT (Line 4091)
MATLAB2Rconnector
Function Call
interactionHelper.m
interactionHelper (Line 60)
MATLAB2Rconnector
Function Call
liftover.m
liftover (Line 93)
MATLAB2Rconnector
Function Call
liftover.m
liftover (Line 93)
MATLAB2Rconnector
Function Call
mediate.m
mediate (Line 295)
MATLAB2Rconnector
Function Call
meta_analysis.m
meta_analysis (Line 105)
MATLAB2Rconnector
Function Call
padjust.m
padjust (Line 21)
MATLAB2Rconnector
Function Call
padjust.m
padjust (Line 21)
MATLAB2Rconnector
Function Call
pheatmap.m
pheatmap (Line 167)
MATLAB2Rconnector
Function Call
pheatmap.m
pheatmap (Line 167)
MATLAB2Rconnector
Function Call
ribocure.m
makeReport (Line 1212)
MATLAB2Rconnector
Function Call
run_bNMF.m
run_bNMF (Line 303)
MATLAB2Rconnector
Function Call
run_bNMF.m
run_bNMF (Line 303)
MATLAB2Rconnector
Function Call
susie.m
susie (Line 69)
MATLAB2Rconnector
Function Call
tabix.m
tabix (Line 91)
MATLAB2Rconnector
Function Call
tabix.m
tabix (Line 103)
MATLAB2Rconnector
Function Call
textRepel.m
textRepel (Line 89)
MATLAB2Rconnector
Function Call
textRepel.m
textRepel (Line 89)
MATLAB2Rconnector
Function Call
trainCVmodels.m
trainInnerCV (Line 778)
MATLAB2Rconnector
Function Call
upsetWrapper.m
upsetWrapper (Line 97)
MATLAB2Rconnector
Function Call

Required Files

FileImpactedRequiredDependency Type
dos2unix.m
MATLAB2Rconnector (Line 33)
dos2unix
Function Call
makeWSLpath.m
MATLAB2Rconnector (Line 32)
makeWSLpath
Function Call
natsort.m
MATLAB2Rconnector (Line 43)
natsort
Function Call
processManager.m
MATLAB2Rconnector (Line 69)
processManager
Function Call
runbash.m
MATLAB2Rconnector (Line 34)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
MATLAB2Rconnector
Toolbox

MATLAB_biomaRt.r

Problems

Impacted Files

FileImpactedRequiredDependency Type
biomaRt.m
biomaRt (Line 35)
MATLAB_biomaRt
Function Argument

mediate.m

Path
D:\MAGE\dependencies\Rwrappers\mediate.m
TypeFunction
Last modified01-Jun-2025 12:47:45
Size (bytes)14399

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
mediate (Line 295)
MATLAB2Rconnector
Function Call
colnames.m
mediate (Line 129)
colnames
Function Call
colnames.m
mediate (Line 138)
colnames
Function Call
colnames.m
mediate (Line 155)
colnames
Function Call
colnames.m
mediate (Line 173)
colnames
Function Call
getPhenoCov.m
mediate (Line 135)
getPhenoCov
Function Call
getRandomName.m
mediate (Line 172)
getRandomName
Function Call
struct2rfun.m
mediate (Line 223)
struct2rfun
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
mediate
Toolbox

mergeFiles.m

Path
D:\MAGE\source\mergeFiles.m
TypeFunction
Last modified10-Aug-2024 16:33:02
Size (bytes)2489

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
mergeFiles (Line 27)
bfilereader
Function Call
makeWSLpath.m
mergeFiles (Line 24)
makeWSLpath
Function Call
makeWSLpath.m
mergeFiles (Line 35)
makeWSLpath
Function Call
natsort.m
mergeFiles (Line 30)
natsort
Function Call
runbash.m
mergeFiles (Line 67)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
mergeFiles
Toolbox

mergeFiles.m

Path
D:\MATLAB.dependencies\MAGE\mergeFiles.m
TypeFunction
Last modified10-Aug-2024 16:33:02
Size (bytes)2489

Impacted Files

FileImpactedRequiredDependency Type
SBayesRC.m
SBayesRC (Line 139)
mergeFiles
Function Call
SBayesRC.m
SBayesRC (Line 139)
mergeFiles
Function Call

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
mergeFiles (Line 27)
bfilereader
Function Call
makeWSLpath.m
mergeFiles (Line 24)
makeWSLpath
Function Call
makeWSLpath.m
mergeFiles (Line 35)
makeWSLpath
Function Call
natsort.m
mergeFiles (Line 30)
natsort
Function Call
runbash.m
mergeFiles (Line 67)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
mergeFiles
Toolbox

mergeMultipleKeyterms.m

Path
D:\MATLAB.dependencies\MAGE\UKBB.Toolbox\mergeMultipleKeyterms.m
TypeFunction
Last modified28-Jan-2020 12:03:28
Size (bytes)3699

Impacted Files

FileImpactedRequiredDependency Type
UKBtraitParser.m
handleSecondaryTerm (Line 411)
mergeMultipleKeyterms
Function Call
getUKBtrait.m
getUKBtrait (Line 32)
mergeMultipleKeyterms
Function Call

Required Files

FileImpactedRequiredDependency Type
UKB_mergeInstance_parser.m
mergeMultipleKeyterms (Line 24)
UKB_mergeInstance_parser
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
mergeMultipleKeyterms
Toolbox

mergeRareSumStat.m

Path
D:\MAGE\source\mergeRareSumStat.m
TypeFunction
Last modified04-Jan-2022 11:39:25
Size (bytes)9089

Required Products

ProductImpactedDependency Type
MATLAB
mergeRareSumStat
Toolbox

mergeStatFiles.m

Path
D:\MAGE\dependencies\REGENIE\mergeStatFiles.m
TypeFunction
Last modified17-Jul-2024 17:29:31
Size (bytes)2013

Required Files

FileImpactedRequiredDependency Type
makeWSLpath.m
mergeStatFiles (Line 17)
makeWSLpath
Function Call
makeWSLpath.m
mergeStatFiles (Line 18)
makeWSLpath
Function Call
runbash.m
mergeStatFiles (Line 57)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
mergeStatFiles
Toolbox

mergeStatFiles.m

Path
D:\MATLAB.dependencies\MAGE\REGENIE\mergeStatFiles.m
TypeFunction
Last modified17-Jul-2024 17:29:31
Size (bytes)2013

Impacted Files

FileImpactedRequiredDependency Type
call_regenie.m
call_regenie (Line 540)
mergeStatFiles
Function Call
call_regenie.m
call_regenie (Line 569)
mergeStatFiles
Function Call
call_regenie.m
call_regenie (Line 578)
mergeStatFiles
Function Call
call_regenie.m
call_regenie (Line 586)
mergeStatFiles
Function Call
call_regenie.m
call_regenie (Line 548)
mergeStatFiles
Function Call
call_regenie.m
call_regenie (Line 577)
mergeStatFiles
Function Call
call_regenie.m
call_regenie (Line 586)
mergeStatFiles
Function Call
call_regenie.m
call_regenie (Line 594)
mergeStatFiles
Function Call
polyfun.m
prunesumstat (Line 718)
mergeStatFiles
Function Call
polyfun.m
prunesumstat (Line 718)
mergeStatFiles
Function Call

Required Files

FileImpactedRequiredDependency Type
makeWSLpath.m
mergeStatFiles (Line 17)
makeWSLpath
Function Call
makeWSLpath.m
mergeStatFiles (Line 18)
makeWSLpath
Function Call
runbash.m
mergeStatFiles (Line 57)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
mergeStatFiles
Toolbox

mergestruct.m

Path
D:\MAGE\dependencies\JSONLab\mergestruct.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)754

Required Products

ProductImpactedDependency Type
MATLAB
mergestruct
Toolbox

mergestruct.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\mergestruct.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)754

Impacted Files

FileImpactedRequiredDependency Type
varargin2struct.m
varargin2struct (Line 31)
mergestruct
Function Call
varargin2struct.m
varargin2struct (Line 31)
mergestruct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
mergestruct
Toolbox

metal.m

Path
D:\MAGE\dependencies\METAL\metal.m
TypeFunction
Last modified15-Jan-2025 17:25:55
Size (bytes)6379

Required Files

FileImpactedRequiredDependency Type
dos2unix.m
metal (Line 115)
dos2unix
Function Call
dos2unix.m
metal (Line 155)
dos2unix
Function Call
makeWSLpath.m
metal (Line 100)
makeWSLpath
Function Call
makeWSLpath.m
metal (Line 117)
makeWSLpath
Function Call
makeWSLpath.m
metal (Line 118)
makeWSLpath
Function Call
makeWSLpath.m
metal (Line 149)
makeWSLpath
Function Call
makeWSLpath.m
metal (Line 157)
makeWSLpath
Function Call
makeWSLpath.m
metal (Line 158)
makeWSLpath
Function Call
metal.m
metal (Line 7)
metal
Function Argument
runbash.m
metal (Line 119)
runbash
Function Call
runbash.m
metal (Line 159)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
metal
Toolbox

metal.m

Path
D:\MATLAB.dependencies\MAGE\METAL\metal.m
TypeFunction
Last modified15-Jan-2025 17:25:55
Size (bytes)6379

Impacted Files

FileImpactedRequiredDependency Type
metal.m
metal (Line 7)
metal
Function Argument
metal.m
metal (Line 7)
metal
Function Argument

Required Files

FileImpactedRequiredDependency Type
dos2unix.m
metal (Line 115)
dos2unix
Function Call
dos2unix.m
metal (Line 155)
dos2unix
Function Call
makeWSLpath.m
metal (Line 100)
makeWSLpath
Function Call
makeWSLpath.m
metal (Line 117)
makeWSLpath
Function Call
makeWSLpath.m
metal (Line 118)
makeWSLpath
Function Call
makeWSLpath.m
metal (Line 149)
makeWSLpath
Function Call
makeWSLpath.m
metal (Line 157)
makeWSLpath
Function Call
makeWSLpath.m
metal (Line 158)
makeWSLpath
Function Call
metal.m
metal (Line 7)
metal
Function Argument
runbash.m
metal (Line 119)
runbash
Function Call
runbash.m
metal (Line 159)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
metal
Toolbox

meta_analysis.m

Path
D:\MAGE\source\meta_analysis.m
TypeFunction
Last modified15-Aug-2023 16:23:20
Size (bytes)9598

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
meta_analysis (Line 105)
MATLAB2Rconnector
Function Call
R2MAT.ci.txt
meta_analysis (Line 149)
R2MAT.ci
Function Argument
R2MAT.hetero.txt
meta_analysis (Line 146)
R2MAT.hetero
Function Argument
R2MAT.weights.txt
meta_analysis (Line 140)
R2MAT.weights
Function Argument
R2MAT_meta_analysis.txt
meta_analysis (Line 111)
R2MAT_meta_analysis
Function Argument
forest.m
meta_analysis (Line 166)
forest
Function Call
meta_analysis.r
META_R (Line 182)
meta_analysis
Function Argument
original.pvlas.txt
meta_analysis (Line 108)
original.pvlas
Function Argument
pval2chi.m
meta_analysis (Line 97)
pval2chi
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
meta_analysis
Toolbox

meta_analysis.r

Problems

Impacted Files

FileImpactedRequiredDependency Type
meta_analysis.m
META_R (Line 182)
meta_analysis
Function Argument

mget

Problems

Impacted Files

FileImpactedRequiredDependency Type
gwascatalog.m
gwascatalogFTP (Line 237)
mget
Function Call
gwascatalog.m
gwascatalogFTP (Line 240)
mget
Function Call
gwascatalog.m
gwascatalogFTP (Line 243)
mget
Function Call
gwascatalog.m
gwascatalogFTP (Line 237)
mget
Function Call
gwascatalog.m
gwascatalogFTP (Line 240)
mget
Function Call
gwascatalog.m
gwascatalogFTP (Line 243)
mget
Function Call

modifyUKB_STRUCT_ALLtags.m

Path
D:\MATLAB.dependencies\MAGE\UKBB.Toolbox\modifyUKB_STRUCT_ALLtags.m
TypeFunction
Last modified29-Aug-2019 13:13:32
Size (bytes)816

Impacted Files

FileImpactedRequiredDependency Type
phenoParser.m
getUKBtrait_prop (Line 371)
modifyUKB_STRUCT_ALLtags
Function Call
phenoParser.m
getUKBtrait_prop (Line 371)
modifyUKB_STRUCT_ALLtags
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
modifyUKB_STRUCT_ALLtags
Toolbox

MRlap.m

Path
D:\MAGE\dependencies\Rwrappers\MRlap.m
TypeFunction
Last modified30-May-2025 16:08:02
Size (bytes)10083

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
MRlap (Line 181)
MATLAB2Rconnector
Function Call
bfilereader.m
MRlap (Line 61)
bfilereader
Function Call
bfilereader.m
MRlap (Line 62)
bfilereader
Function Call
bgireader.m
MRlap (Line 119)
bgireader
Function Call
changeColnames.m
MRlap (Line 72)
changeColnames
Function Call
changeColnames.m
MRlap (Line 76)
changeColnames
Function Call
colnames.m
MRlap (Line 208)
colnames
Function Call
colnames.m
MRlap (Line 211)
colnames
Function Call
colnames.m
MRlap (Line 213)
colnames
Function Call
colnames.m
MRlap (Line 215)
colnames
Function Call
colnames.m
MRlap (Line 218)
colnames
Function Call
colnames.m
MRlap (Line 83)
colnames
Function Call
createGWASheader.m
MRlap (Line 64)
createGWASheader
Function Call
createGWASheader.m
MRlap (Line 65)
createGWASheader
Function Call
filterFileRows.m
MRlap (Line 153)
filterFileRows
Function Call
getInsampleLD.m
MRlap (Line 124)
getInsampleLD
Function Call
getQCEID.m
MRlap (Line 110)
getQCEID
Function Call
getRandomName.m
MRlap (Line 38)
getRandomName
Function Call
struct2rfun.m
MRlap (Line 175)
struct2rfun
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
MRlap
Toolbox
Statistics and Machine Learning Toolbox
MRlap (Line 111)
Function Call

MRrunner.m

Path
D:\MAGE\source\MRrunner.m
TypeFunction
Last modified07-Nov-2024 17:16:12
Size (bytes)17885

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
MRrunner (Line 325)
MATLAB2Rconnector
Function Call
colnames.m
MRrunner (Line 106)
colnames
Function Call
colnames.m
MRrunner (Line 125)
colnames
Function Call
colnames.m
MRrunner (Line 173)
colnames
Function Call
colnames.m
MRrunner (Line 189)
colnames
Function Call
createGWASheader.m
MRrunner (Line 173)
createGWASheader
Function Call
createGWASheader.m
MRrunner (Line 189)
createGWASheader
Function Call
getRandomName.m
MRrunner (Line 154)
getRandomName
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
MRrunner
Toolbox

mtag.m

Path
D:\MAGE\dependencies\mtag\mtag.m
TypeFunction
Last modified13-Jan-2025 18:02:19
Size (bytes)9183

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
munge_sumstats (Line 143)
bfilereader
Function Call
getRandomName.m
munge_sumstats (Line 136)
getRandomName
Function Call
getRandomName.m
mtag (Line 79)
getRandomName
Function Call
makeWSLpath.m
munge_sumstats (Line 140)
makeWSLpath
Function Call
makeWSLpath.m
munge_sumstats (Line 151)
makeWSLpath
Function Call
makeWSLpath.m
munge_sumstats (Line 163)
makeWSLpath
Function Call
makeWSLpath.m
munge_sumstats (Line 169)
makeWSLpath
Function Call
makeWSLpath.m
makeCMD (Line 199)
makeWSLpath
Function Call
makeWSLpath.m
mtag (Line 83)
makeWSLpath
Function Call
mtag.m
mtag (Line 46)
mtag
Function Argument
runbash.m
munge_sumstats (Line 149)
runbash
Function Call
runbash.m
munge_sumstats (Line 167)
runbash
Function Call
runbash.m
mtag (Line 84)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
mtag
Toolbox

mtag.m

Path
D:\MATLAB.dependencies\MAGE\mtag\mtag.m
TypeFunction
Last modified13-Jan-2025 18:02:19
Size (bytes)9183

Impacted Files

FileImpactedRequiredDependency Type
mtag.m
mtag (Line 46)
mtag
Function Argument
mtag.m
mtag (Line 46)
mtag
Function Argument

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
munge_sumstats (Line 143)
bfilereader
Function Call
getRandomName.m
munge_sumstats (Line 136)
getRandomName
Function Call
getRandomName.m
mtag (Line 79)
getRandomName
Function Call
makeWSLpath.m
munge_sumstats (Line 140)
makeWSLpath
Function Call
makeWSLpath.m
munge_sumstats (Line 151)
makeWSLpath
Function Call
makeWSLpath.m
munge_sumstats (Line 163)
makeWSLpath
Function Call
makeWSLpath.m
munge_sumstats (Line 169)
makeWSLpath
Function Call
makeWSLpath.m
makeCMD (Line 199)
makeWSLpath
Function Call
makeWSLpath.m
mtag (Line 83)
makeWSLpath
Function Call
mtag.m
mtag (Line 46)
mtag
Function Argument
runbash.m
munge_sumstats (Line 149)
runbash
Function Call
runbash.m
munge_sumstats (Line 167)
runbash
Function Call
runbash.m
mtag (Line 84)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
mtag
Toolbox

natsort.m

Path
D:\MAGE\dependencies\natsort.m
TypeFunction
Last modified31-Jan-2022 07:04:06
Size (bytes)14760

Required Products

ProductImpactedDependency Type
MATLAB
natsort
Toolbox

natsort.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\natsort.m
TypeFunction
Last modified31-Jan-2022 07:04:06
Size (bytes)14760

Impacted Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
MATLAB2Rconnector (Line 43)
natsort
Function Call
MATLAB2Rconnector.m
MATLAB2Rconnector (Line 43)
natsort
Function Call
callVEP.m
getdbNSFP (Line 719)
natsort
Function Call
callVEP.m
getdbNSFP (Line 719)
natsort
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 149)
natsort
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 149)
natsort
Function Call
effDotPlotter.m
effDotPlotter (Line 193)
natsort
Function Call
effDotPlotter.m
effDotPlotter (Line 194)
natsort
Function Call
geneWrapper.m
parseWESqc (Line 1119)
natsort
Function Call
geneWrapper.m
parseWESqc (Line 1134)
natsort
Function Call
getUKBdictionary.m
getUKBdictionary (Line 53)
natsort
Function Call
getUKBdictionary.m
getUKBdictionary (Line 53)
natsort
Function Call
getbulkgeno.m
getbulkgeno (Line 83)
natsort
Function Call
getbulkgeno.m
getbulkgeno (Line 97)
natsort
Function Call
getbulkgeno.m
getbulkgeno (Line 83)
natsort
Function Call
getbulkgeno.m
getbulkgeno (Line 97)
natsort
Function Call
getfilenames.m
getfilenames (Line 38)
natsort
Function Call
getfilenames.m
getfilenames (Line 38)
natsort
Function Call
gwasrunner.m
readPredFiles (Line 4543)
natsort
Function Call
gwasrunner.m
readPredFiles (Line 4543)
natsort
Function Call
ldclump.m
ldclump (Line 109)
natsort
Function Call
ldclump.m
ldclump (Line 109)
natsort
Function Call
ldclumpPeaks.m
ldclumpPeaks (Line 60)
natsort
Function Call
ldclumpPeaks.m
ldclumpPeaks (Line 69)
natsort
Function Call
ldclumpPeaks.m
ldclumpPeaks (Line 60)
natsort
Function Call
ldclumpPeaks.m
ldclumpPeaks (Line 69)
natsort
Function Call
manplotter.m
manplotter (Line 120)
natsort
Function Call
manplotter.m
manplotter (Line 191)
natsort
Function Call
mergeFiles.m
mergeFiles (Line 30)
natsort
Function Call
mergeFiles.m
mergeFiles (Line 30)
natsort
Function Call
phenoParser.m
natsort2 (Line 2672)
natsort
Function Call
phenoParser.m
natsort2 (Line 2672)
natsort
Function Call
polyfun.m
compPrior (Line 217)
natsort
Function Call
polyfun.m
compPrior (Line 218)
natsort
Function Call
polyfun.m
compPrior (Line 255)
natsort
Function Call
polyfun.m
compPrior (Line 256)
natsort
Function Call
polyfun.m
finemapper (Line 286)
natsort
Function Call
polyfun.m
prunesumstat (Line 698)
natsort
Function Call
polyfun.m
polyfun (Line 70)
natsort
Function Call
polyfun.m
compPrior (Line 217)
natsort
Function Call
polyfun.m
compPrior (Line 218)
natsort
Function Call
polyfun.m
compPrior (Line 255)
natsort
Function Call
polyfun.m
compPrior (Line 256)
natsort
Function Call
polyfun.m
finemapper (Line 286)
natsort
Function Call
polyfun.m
prunesumstat (Line 698)
natsort
Function Call
polyfun.m
polyfun (Line 70)
natsort
Function Call
runVEP.m
runVEP (Line 123)
natsort
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
natsort
Toolbox

nestbracket2dim.m

Path
D:\MAGE\dependencies\JSONLab\nestbracket2dim.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)2403

Required Products

ProductImpactedDependency Type
MATLAB
nestbracket2dim
Toolbox

nestbracket2dim.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\nestbracket2dim.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)2403

Impacted Files

FileImpactedRequiredDependency Type
loadjson.m
parse_array (Line 230)
nestbracket2dim
Function Call
loadjson.m
parse_array (Line 230)
nestbracket2dim
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
nestbracket2dim
Toolbox

N_perc

Problems

Impacted Files

FileImpactedRequiredDependency Type
barPlotter.m
drawBarPlot (Line 194)
N_perc
Function Call
barPlotter.m
drawBarPlot (Line 194)
N_perc
Function Call

OCTAVE_VERSION

Problems

Impacted Files

FileImpactedRequiredDependency Type
isoctavemesh.m
isoctavemesh (Line 18)
OCTAVE_VERSION
Function Call
isoctavemesh.m
isoctavemesh (Line 18)
OCTAVE_VERSION
Function Call
savejson.m
escapejsonstring (Line 779)
OCTAVE_VERSION
Function Call
savejson.m
escapejsonstring (Line 779)
OCTAVE_VERSION
Function Call

olink_batch_number.dat

Problems

Impacted Files

FileImpactedRequiredDependency Type
getOLINKbatch.m
getOLINKbatch (Line 17)
olink_batch_number
Function Argument
getOLINKbatch.m
getOLINKbatch (Line 17)
olink_batch_number
Function Argument

olink_proteomics_parser.m

Path
D:\MAGE\UKBB.Toolbox\olink_proteomics_parser.m
TypeFunction
Last modified22-Aug-2023 10:06:30
Size (bytes)1908

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
olink_proteomics_parser (Line 17)
bfilereader
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
olink_proteomics_parser
Toolbox
Parallel Computing Toolbox
olink_proteomics_parser (Line 10)
Function Call
Parallel Computing Toolbox
olink_proteomics_parser (Line 9)
Function Call

openGWAS.m

Path
D:\MAGE\dependencies\openGWAS\openGWAS.m
TypeFunction
Last modified22-Jan-2025 19:51:10
Size (bytes)24138

Required Files

FileImpactedRequiredDependency Type
EnsemblREST.m
openGWAS (Line 176)
EnsemblREST
Function Call
EnsemblREST.m
openGWAS (Line 180)
EnsemblREST
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
openGWAS
Toolbox

opentargets.m

Path
D:\MAGE\source\opentargets.m
TypeFunction
Last modified29-Apr-2025 18:03:13
Size (bytes)15624

Required Products

ProductImpactedDependency Type
MATLAB
opentargets
Toolbox

opentargets.m

Path
D:\MATLAB.dependencies\MAGE\opentargets.m
TypeFunction
Last modified29-Apr-2025 18:03:13
Size (bytes)15624

Impacted Files

FileImpactedRequiredDependency Type
mapVariant2gene.m
mapVariant2gene (Line 160)
opentargets
Function Call
mapVariant2gene.m
mapVariant2gene (Line 171)
opentargets
Function Call
mapVariant2gene.m
mapVariant2gene (Line 194)
opentargets
Function Call
mapVariant2gene.m
mapVariant2gene (Line 163)
opentargets
Function Call
mapVariant2gene.m
mapVariant2gene (Line 174)
opentargets
Function Call
mapVariant2gene.m
mapVariant2gene (Line 197)
opentargets
Function Call
opentargets_genetics.m
parseSchema (Line 61)
opentargets
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
opentargets
Toolbox

opentargets_genetics.m

Path
D:\MAGE\source\opentargets_genetics.m
TypeFunction
Last modified29-Apr-2025 11:35:22
Size (bytes)7504

Required Files

FileImpactedRequiredDependency Type
opentargets.m
parseSchema (Line 61)
opentargets
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
opentargets_genetics
Toolbox

original.pvlas.txt

Problems

Impacted Files

FileImpactedRequiredDependency Type
meta_analysis.m
meta_analysis (Line 108)
original.pvlas
Function Argument

padjust.m

Path
D:\MAGE\dependencies\Rwrappers\padjust.m
TypeFunction
Last modified24-May-2023 16:11:51
Size (bytes)895

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
padjust (Line 21)
MATLAB2Rconnector
Function Call
getRandomName.m
padjust (Line 13)
getRandomName
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
padjust
Toolbox

padjust.m

Path
D:\MATLAB.dependencies\MAGE\Rwrappers\padjust.m
TypeFunction
Last modified24-May-2023 16:11:51
Size (bytes)895

Impacted Files

FileImpactedRequiredDependency Type
effDotPlotter.m
effDotPlotter (Line 118)
padjust
Function Call
effDotPlotter.m
effDotPlotter (Line 124)
padjust
Function Call
effNetPlotter.m
effNetPlotter (Line 79)
padjust
Function Call
rarePlotter.m
rarePlotter (Line 152)
padjust
Function Call
rarePlotter.m
rarePlotter (Line 152)
padjust
Function Call

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
padjust (Line 21)
MATLAB2Rconnector
Function Call
getRandomName.m
padjust (Line 13)
getRandomName
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
padjust
Toolbox

palette.m

Path
D:\MAGE\source\palette.m
TypeFunction
Last modified10-Sep-2024 17:03:58
Size (bytes)2880

Required Products

ProductImpactedDependency Type
MATLAB
palette
Toolbox

palette.m

Path
D:\MATLAB.dependencies\MAGE\palette.m
TypeFunction
Last modified10-Sep-2024 17:03:58
Size (bytes)2880

Impacted Files

FileImpactedRequiredDependency Type
effDotPlotter.m
effDotPlotter (Line 184)
palette
Function Call
effPlotter.m
effPlotter (Line 250)
palette
Function Call
genePlotter.m
genePlotter (Line 431)
palette
Function Call
genePlotter.m
genePlotter (Line 431)
palette
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
palette
Toolbox

parseEpirr.m

Path
D:\MAGE\dependencies\ldsc\parseEpirr.m
TypeFunction
Last modified23-Feb-2023 17:21:45
Size (bytes)1052

Required Files

FileImpactedRequiredDependency Type
RoadMap_ENTEX_Finuacane2018_supp7.mat
parseEpirr (Line 6)
RoadMap_ENTEX_Finuacane2018_supp7
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
parseEpirr
Toolbox

parsepv.m

Path
D:\MAGE\dependencies\line2arrow\parsepv\parsepv.m
TypeFunction
Last modified24-Sep-2021 02:02:30
Size (bytes)2308

Required Products

ProductImpactedDependency Type
MATLAB
parsepv
Toolbox

parsepv.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\line2arrow\parsepv\parsepv.m
TypeFunction
Last modified24-Sep-2021 02:02:30
Size (bytes)2308

Impacted Files

FileImpactedRequiredDependency Type
line2arrow.m
addarrow (Line 172)
parsepv
Function Call
line2arrow.m
addarrow (Line 172)
parsepv
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
parsepv
Toolbox

pheatmap.m

Path
D:\MAGE\dependencies\Rwrappers\pheatmap.m
TypeFunction
Last modified07-Oct-2024 15:28:29
Size (bytes)7563

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
pheatmap (Line 167)
MATLAB2Rconnector
Function Call
addRfont.m
pheatmap (Line 166)
addRfont
Function Call
getRandomName.m
pheatmap (Line 77)
getRandomName
Function Call
struct2rfun.m
pheatmap (Line 155)
struct2rfun
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
pheatmap
Toolbox

pheatmap.m

Path
D:\MATLAB.dependencies\MAGE\Rwrappers\pheatmap.m
TypeFunction
Last modified07-Oct-2024 15:28:29
Size (bytes)7563

Impacted Files

FileImpactedRequiredDependency Type
corrtab.m
corrtab (Line 34)
pheatmap
Function Call

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
pheatmap (Line 167)
MATLAB2Rconnector
Function Call
addRfont.m
pheatmap (Line 166)
addRfont
Function Call
getRandomName.m
pheatmap (Line 77)
getRandomName
Function Call
struct2rfun.m
pheatmap (Line 155)
struct2rfun
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
pheatmap
Toolbox

pheno.m

Path
D:\MAGE\source\pheno.m
TypeClass
Last modified05-Apr-2022 09:32:20
Size (bytes)3691

Required Products

ProductImpactedDependency Type
MATLAB
pheno
Toolbox

phenoParser.m

Path
D:\MAGE\UKBB.Toolbox\phenoParser.m
TypeFunction
Last modified30-May-2025 17:05:38
Size (bytes)141937

Required Files

FileImpactedRequiredDependency Type
colnames.m
parsePhenoQuery (Line 1083)
colnames
Function Call
colnames.m
loadDFfromUKBBasket (Line 1318)
colnames
Function Call
colnames.m
loadDFfromUKBBasket (Line 1322)
colnames
Function Call
colnames.m
loadDFfromUKBBasket (Line 1348)
colnames
Function Call
colnames.m
loadDFfromUKBBasket (Line 1369)
colnames
Function Call
colnames.m
loadDFfromUKBBasket (Line 1398)
colnames
Function Call
colnames.m
loadDFfromUKBBasket (Line 1403)
colnames
Function Call
colnames.m
loadDFfromUKBBasket (Line 2266)
colnames
Function Call
colnames.m
subsetUKBBtab (Line 2392)
colnames
Function Call
colnames.m
subsetUKBBtab (Line 2423)
colnames
Function Call
colnames.m
subsetUKBBtab (Line 2479)
colnames
Function Call
colnames.m
subsetUKBBtab (Line 2510)
colnames
Function Call
colnames.m
subsetUKBBtab (Line 2522)
colnames
Function Call
colnames.m
subsetUKBBtab (Line 2538)
colnames
Function Call
colnames.m
getTimeDatedfs (Line 3008)
colnames
Function Call
colnames.m
getTimeDatedfs (Line 3124)
colnames
Function Call
colnames.m
getTimeDatedfs (Line 3132)
colnames
Function Call
colnames.m
RAPcompressBasket (Line 3351)
colnames
Function Call
colnames.m
filterChunkData (Line 3398)
colnames
Function Call
colnames.m
filterChunkData (Line 3479)
colnames
Function Call
combine_UKB_STRUCTs.m
getUKBtrait_prop (Line 369)
combine_UKB_STRUCTs
Function Call
duplicates.m
parsePhenoQuery (Line 1147)
duplicates
Function Call
duplicates.m
loadDFfromUKBBasket (Line 2121)
duplicates
Function Call
duplicates.m
subsetUKBBtab (Line 2656)
duplicates
Function Call
dx_extract_dataset.m
parsePhenoQuery (Line 1013)
dx_extract_dataset
Function Call
dx_extract_dataset.m
parsePhenoQuery (Line 1149)
dx_extract_dataset
Function Call
getHESIN_DEATH.m
loadDFfromUKBBasket (Line 1549)
getHESIN_DEATH
Function Call
getHESIN_DEATH.m
loadDFfromUKBBasket (Line 1565)
getHESIN_DEATH
Function Call
getHESIN_DEATH.m
loadDFfromUKBBasket (Line 1570)
getHESIN_DEATH
Function Call
getHESIN_DEATH.m
getUKBtrait_prop (Line 347)
getHESIN_DEATH
Function Call
getRandomName.m
parsePhenoQuery (Line 1231)
getRandomName
Function Call
getUKBdictionary.m
phenoParser (Line 199)
getUKBdictionary
Function Call
getUKBtrait.m
getUKBtrait_prop (Line 361)
getUKBtrait
Function Call
modifyUKB_STRUCT_ALLtags.m
getUKBtrait_prop (Line 371)
modifyUKB_STRUCT_ALLtags
Function Call
natsort.m
natsort2 (Line 2672)
natsort
Function Call
phenoParser.m
phenoParser (Line 101)
phenoParser
Function Argument
phenoParser.m
phenoParser (Line 102)
phenoParser
Function Argument
phenoParser.m
phenoParser (Line 103)
phenoParser
Function Argument
phenoParser.m
loadDFfromUKBBasket (Line 1827)
phenoParser
Function Argument
phenoParser.m
loadDFfromUKBBasket (Line 2072)
phenoParser
Function Argument
phenoParser.m
getUKBtrait_prop (Line 270)
phenoParser
Function Argument
phenoParser.m
parsePhenoQuery (Line 970)
phenoParser
Function Call
phenoParser.m
parsePhenoQuery (Line 977)
phenoParser
Function Call
phenoParser.m
parsePhenoQuery (Line 985)
phenoParser
Function Call
phenoParser.m
parsePhenoQuery (Line 986)
phenoParser
Function Call
progressGen.m
loadDFfromUKBBasket (Line 1608)
progressGen
Function Call
progressGen.m
loadDFfromUKBBasket (Line 1612)
progressGen
Function Call
struct2array.m
loadDFfromUKBBasket (Line 2074)
struct2array
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
phenoParser
Toolbox
Parallel Computing Toolbox
rapPruneDelimiter (Line 3214)
Function Call
Parallel Computing Toolbox
rapPruneDelimiter (Line 3215)
Function Call
Parallel Computing Toolbox
rapPruneDelimiter (Line 3241)
Toolbox
Parallel Computing Toolbox
filterChunkData (Line 3369)
Function Call
Parallel Computing Toolbox
filterChunkData (Line 3370)
Function Call
Parallel Computing Toolbox
filterChunkData (Line 3437)
Toolbox
Parallel Computing Toolbox
filterChunkData (Line 3514)
Toolbox
Text Analytics Toolbox
getTimeDatedfs (Line 3067)
Function Call

phenoParser.m

Path
D:\MATLAB.dependencies\MAGE\UKBB.Toolbox\phenoParser.m
TypeFunction
Last modified29-May-2025 15:59:44
Size (bytes)141897

Impacted Files

FileImpactedRequiredDependency Type
UKB_HESIN_DEATH_2mat.m
UKB_HESIN_DEATH_2mat (Line 55)
phenoParser
Function Call
UKB_HESIN_DEATH_2mat.m
UKB_HESIN_DEATH_2mat (Line 59)
phenoParser
Function Call
UKB_HESIN_DEATH_2mat.m
UKB_HESIN_DEATH_2mat (Line 60)
phenoParser
Function Call
UKB_HESIN_DEATH_2mat.m
UKB_HESIN_DEATH_2mat (Line 55)
phenoParser
Function Call
UKB_HESIN_DEATH_2mat.m
UKB_HESIN_DEATH_2mat (Line 59)
phenoParser
Function Call
UKB_HESIN_DEATH_2mat.m
UKB_HESIN_DEATH_2mat (Line 60)
phenoParser
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 14)
phenoParser
Function Argument
dx_extract_dataset.m
dx_extract_dataset (Line 14)
phenoParser
Function Argument
getHESIN_DEATH.m
getHESIN_DEATH (Line 27)
phenoParser
Function Argument
getHESIN_DEATH.m
getHESIN_DEATH (Line 27)
phenoParser
Function Argument
getUKB_alcohol.m
getUKB_alcohol (Line 35)
phenoParser
Function Call
phenoParser.m
phenoParser (Line 101)
phenoParser
Function Argument
phenoParser.m
phenoParser (Line 102)
phenoParser
Function Argument
phenoParser.m
phenoParser (Line 103)
phenoParser
Function Argument
phenoParser.m
loadDFfromUKBBasket (Line 1827)
phenoParser
Function Argument
phenoParser.m
loadDFfromUKBBasket (Line 2072)
phenoParser
Function Argument
phenoParser.m
getUKBtrait_prop (Line 270)
phenoParser
Function Argument
phenoParser.m
parsePhenoQuery (Line 970)
phenoParser
Function Call
phenoParser.m
parsePhenoQuery (Line 977)
phenoParser
Function Call
phenoParser.m
parsePhenoQuery (Line 985)
phenoParser
Function Call
phenoParser.m
parsePhenoQuery (Line 986)
phenoParser
Function Call
phenoParser.m
phenoParser (Line 101)
phenoParser
Function Argument
phenoParser.m
phenoParser (Line 102)
phenoParser
Function Argument
phenoParser.m
phenoParser (Line 103)
phenoParser
Function Argument
phenoParser.m
loadDFfromUKBBasket (Line 1827)
phenoParser
Function Argument
phenoParser.m
loadDFfromUKBBasket (Line 2072)
phenoParser
Function Argument
phenoParser.m
getUKBtrait_prop (Line 270)
phenoParser
Function Argument
phenoParser.m
parsePhenoQuery (Line 970)
phenoParser
Function Call
phenoParser.m
parsePhenoQuery (Line 977)
phenoParser
Function Call
phenoParser.m
parsePhenoQuery (Line 985)
phenoParser
Function Call
phenoParser.m
parsePhenoQuery (Line 986)
phenoParser
Function Call
testPhenoparser.m
testPhenoparser (Line 39)
phenoParser
Function Call
testPhenoparser.m
testPhenoparser (Line 47)
phenoParser
Function Call
testPhenoparser.m
testPhenoparser (Line 54)
phenoParser
Function Call
testPhenoparser.m
testPhenoparser (Line 60)
phenoParser
Function Call
testPhenoparser.m
testPhenoparser (Line 66)
phenoParser
Function Call
testPhenoparser.m
testPhenoparser (Line 71)
phenoParser
Function Call
testPhenoparser.m
testPhenoparser (Line 76)
phenoParser
Function Call
testPhenoparser.m
testPhenoparser (Line 85)
phenoParser
Function Call
testPhenoparser.m
testPhenoparser (Line 90)
phenoParser
Function Call

Required Files

FileImpactedRequiredDependency Type
colnames.m
parsePhenoQuery (Line 1083)
colnames
Function Call
colnames.m
loadDFfromUKBBasket (Line 1318)
colnames
Function Call
colnames.m
loadDFfromUKBBasket (Line 1322)
colnames
Function Call
colnames.m
loadDFfromUKBBasket (Line 1348)
colnames
Function Call
colnames.m
loadDFfromUKBBasket (Line 1369)
colnames
Function Call
colnames.m
loadDFfromUKBBasket (Line 1398)
colnames
Function Call
colnames.m
loadDFfromUKBBasket (Line 1403)
colnames
Function Call
colnames.m
loadDFfromUKBBasket (Line 2266)
colnames
Function Call
colnames.m
subsetUKBBtab (Line 2392)
colnames
Function Call
colnames.m
subsetUKBBtab (Line 2423)
colnames
Function Call
colnames.m
subsetUKBBtab (Line 2479)
colnames
Function Call
colnames.m
subsetUKBBtab (Line 2510)
colnames
Function Call
colnames.m
subsetUKBBtab (Line 2522)
colnames
Function Call
colnames.m
subsetUKBBtab (Line 2538)
colnames
Function Call
colnames.m
getTimeDatedfs (Line 3008)
colnames
Function Call
colnames.m
getTimeDatedfs (Line 3124)
colnames
Function Call
colnames.m
getTimeDatedfs (Line 3132)
colnames
Function Call
colnames.m
RAPcompressBasket (Line 3351)
colnames
Function Call
colnames.m
filterChunkData (Line 3398)
colnames
Function Call
colnames.m
filterChunkData (Line 3479)
colnames
Function Call
combine_UKB_STRUCTs.m
getUKBtrait_prop (Line 369)
combine_UKB_STRUCTs
Function Call
duplicates.m
parsePhenoQuery (Line 1147)
duplicates
Function Call
duplicates.m
loadDFfromUKBBasket (Line 2121)
duplicates
Function Call
duplicates.m
subsetUKBBtab (Line 2656)
duplicates
Function Call
dx_extract_dataset.m
parsePhenoQuery (Line 1013)
dx_extract_dataset
Function Call
dx_extract_dataset.m
parsePhenoQuery (Line 1149)
dx_extract_dataset
Function Call
getHESIN_DEATH.m
loadDFfromUKBBasket (Line 1549)
getHESIN_DEATH
Function Call
getHESIN_DEATH.m
loadDFfromUKBBasket (Line 1565)
getHESIN_DEATH
Function Call
getHESIN_DEATH.m
loadDFfromUKBBasket (Line 1570)
getHESIN_DEATH
Function Call
getHESIN_DEATH.m
getUKBtrait_prop (Line 347)
getHESIN_DEATH
Function Call
getRandomName.m
parsePhenoQuery (Line 1231)
getRandomName
Function Call
getUKBdictionary.m
phenoParser (Line 199)
getUKBdictionary
Function Call
getUKBtrait.m
getUKBtrait_prop (Line 361)
getUKBtrait
Function Call
modifyUKB_STRUCT_ALLtags.m
getUKBtrait_prop (Line 371)
modifyUKB_STRUCT_ALLtags
Function Call
natsort.m
natsort2 (Line 2672)
natsort
Function Call
phenoParser.m
phenoParser (Line 101)
phenoParser
Function Argument
phenoParser.m
phenoParser (Line 102)
phenoParser
Function Argument
phenoParser.m
phenoParser (Line 103)
phenoParser
Function Argument
phenoParser.m
loadDFfromUKBBasket (Line 1827)
phenoParser
Function Argument
phenoParser.m
loadDFfromUKBBasket (Line 2072)
phenoParser
Function Argument
phenoParser.m
getUKBtrait_prop (Line 270)
phenoParser
Function Argument
phenoParser.m
parsePhenoQuery (Line 970)
phenoParser
Function Call
phenoParser.m
parsePhenoQuery (Line 977)
phenoParser
Function Call
phenoParser.m
parsePhenoQuery (Line 985)
phenoParser
Function Call
phenoParser.m
parsePhenoQuery (Line 986)
phenoParser
Function Call
progressGen.m
loadDFfromUKBBasket (Line 1608)
progressGen
Function Call
progressGen.m
loadDFfromUKBBasket (Line 1612)
progressGen
Function Call
struct2array.m
loadDFfromUKBBasket (Line 2074)
struct2array
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
phenoParser
Toolbox
Parallel Computing Toolbox
rapPruneDelimiter (Line 3214)
Function Call
Parallel Computing Toolbox
rapPruneDelimiter (Line 3215)
Function Call
Parallel Computing Toolbox
rapPruneDelimiter (Line 3241)
Toolbox
Parallel Computing Toolbox
filterChunkData (Line 3369)
Function Call
Parallel Computing Toolbox
filterChunkData (Line 3370)
Function Call
Parallel Computing Toolbox
filterChunkData (Line 3437)
Toolbox
Parallel Computing Toolbox
filterChunkData (Line 3514)
Toolbox
Text Analytics Toolbox
getTimeDatedfs (Line 3067)
Function Call

phenoscanner.m

Path
D:\MAGE\dependencies\PhenoScanner\phenoscanner.m
TypeFunction
Last modified25-Aug-2020 19:49:35
Size (bytes)5499

Required Products

ProductImpactedDependency Type
MATLAB
phenoscanner
Toolbox

plotboxpos.m

Path
D:\MAGE\dependencies\plotboxpos.m
TypeFunction
Last modified10-Feb-2022 10:06:26
Size (bytes)3985

Required Products

ProductImpactedDependency Type
MATLAB
plotboxpos
Toolbox

plotboxpos.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\plotboxpos.m
TypeFunction
Last modified10-Feb-2022 10:06:26
Size (bytes)3985

Impacted Files

FileImpactedRequiredDependency Type
effPlotter.m
checkTitle (Line 1162)
plotboxpos
Function Call
effPlotter.m
checkTitle (Line 1189)
plotboxpos
Function Call
effPlotter.m
effPlotter (Line 864)
plotboxpos
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
plotboxpos
Toolbox

plotResiduals

Problems

Impacted Files

FileImpactedRequiredDependency Type
gwasrunner.m
runModels (Line 1969)
plotResiduals
Function Call
gwasrunner.m
runModels (Line 1971)
plotResiduals
Function Call
gwasrunner.m
runModels (Line 1973)
plotResiduals
Function Call
gwasrunner.m
runModels (Line 1969)
plotResiduals
Function Call
gwasrunner.m
runModels (Line 1971)
plotResiduals
Function Call
gwasrunner.m
runModels (Line 1973)
plotResiduals
Function Call

polyfun.m

Path
D:\MAGE\dependencies\polyfun\polyfun.m
TypeFunction
Last modified01-May-2023 12:50:40
Size (bytes)30752

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
polyfun (Line 112)
bfilereader
Function Call
bfilereader.m
finemapper (Line 452)
bfilereader
Function Call
bgireader.m
fetchLDmat (Line 507)
bgireader
Function Call
colnames.m
finemapper (Line 279)
colnames
Function Call
colnames.m
prunesumstat (Line 613)
colnames
Function Call
createGWASheader.m
prunesumstat (Line 613)
createGWASheader
Function Call
dos2unix.m
polyfun (Line 141)
dos2unix
Function Call
dos2unix.m
fetchLDmat (Line 521)
dos2unix
Function Call
dos2unix.m
polyfun (Line 52)
dos2unix
Function Call
dos2unix.m
polyfun (Line 60)
dos2unix
Function Call
duplicates.m
prunesumstat (Line 624)
duplicates
Function Call
getInsampleLD.m
fetchLDmat (Line 512)
getInsampleLD
Function Call
getQCEID.m
fetchLDmat (Line 490)
getQCEID
Function Call
getfilenames.m
compPrior (Line 213)
getfilenames
Function Call
getfilenames.m
compPrior (Line 253)
getfilenames
Function Call
getfilenames.m
finemapper (Line 444)
getfilenames
Function Call
getfilenames.m
prunesumstat (Line 657)
getfilenames
Function Call
getfilenames.m
polyfun (Line 85)
getfilenames
Function Call
getfilenames.m
polyfun (Line 88)
getfilenames
Function Call
makeWSLpath.m
polyfun (Line 151)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 217)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 218)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 228)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 229)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 230)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 239)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 240)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 255)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 256)
makeWSLpath
Function Call
makeWSLpath.m
finemapper (Line 272)
makeWSLpath
Function Call
makeWSLpath.m
finemapper (Line 273)
makeWSLpath
Function Call
makeWSLpath.m
finemapper (Line 342)
makeWSLpath
Function Call
makeWSLpath.m
finemapper (Line 355)
makeWSLpath
Function Call
makeWSLpath.m
finemapper (Line 389)
makeWSLpath
Function Call
makeWSLpath.m
finemapper (Line 436)
makeWSLpath
Function Call
makeWSLpath.m
prunesumstat (Line 657)
makeWSLpath
Function Call
makeWSLpath.m
polyfun (Line 75)
makeWSLpath
Function Call
makeWSLpath.m
polyfun (Line 76)
makeWSLpath
Function Call
makeWSLpath.m
polyfun (Line 77)
makeWSLpath
Function Call
makeWSLpath.m
polyfun (Line 80)
makeWSLpath
Function Call
makeWSLpath.m
polyfun (Line 81)
makeWSLpath
Function Call
mergeStatFiles.m
prunesumstat (Line 718)
mergeStatFiles
Function Call
natsort.m
compPrior (Line 217)
natsort
Function Call
natsort.m
compPrior (Line 218)
natsort
Function Call
natsort.m
compPrior (Line 255)
natsort
Function Call
natsort.m
compPrior (Line 256)
natsort
Function Call
natsort.m
finemapper (Line 286)
natsort
Function Call
natsort.m
prunesumstat (Line 698)
natsort
Function Call
natsort.m
polyfun (Line 70)
natsort
Function Call
polyfun.m
polyfun (Line 26)
polyfun
Function Argument
polyfun.m
polyfun (Line 27)
polyfun
Function Argument
polyfun.m
polyfun (Line 31)
polyfun
Function Argument
polyfun.m
polyfun (Line 32)
polyfun
Function Argument
readGWASfile.m
prunesumstat (Line 611)
readGWASfile
Function Call
runbash.m
polyfun (Line 156)
runbash
Function Call
runbash.m
compPrior (Line 231)
runbash
Function Call
runbash.m
compPrior (Line 244)
runbash
Function Call
runbash.m
finemapper (Line 326)
runbash
Function Call
runbash.m
finemapper (Line 390)
runbash
Function Call
runbash.m
finemapper (Line 427)
runbash
Function Call
ss2fuma.m
prunesumstat (Line 731)
ss2fuma
Function Call
strshare.m
polyfun (Line 101)
strshare
Function Call
strshare.m
polyfun (Line 71)
strshare
Function Call
strshare.m
polyfun (Line 99)
strshare
Function Call
terminate
fetchLDmat (Line 496)
terminate
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
polyfun
Toolbox
Parallel Computing Toolbox
polyfun (Line 107)
Function Call
Parallel Computing Toolbox
polyfun (Line 108)
Function Call
Parallel Computing Toolbox
prunesumstat (Line 707)
Toolbox

polyfun.m

Path
D:\MATLAB.dependencies\MAGE\polyfun\polyfun.m
TypeFunction
Last modified01-May-2023 12:50:40
Size (bytes)30752

Impacted Files

FileImpactedRequiredDependency Type
polyfun.m
polyfun (Line 26)
polyfun
Function Argument
polyfun.m
polyfun (Line 27)
polyfun
Function Argument
polyfun.m
polyfun (Line 31)
polyfun
Function Argument
polyfun.m
polyfun (Line 32)
polyfun
Function Argument
polyfun.m
polyfun (Line 26)
polyfun
Function Argument
polyfun.m
polyfun (Line 27)
polyfun
Function Argument
polyfun.m
polyfun (Line 31)
polyfun
Function Argument
polyfun.m
polyfun (Line 32)
polyfun
Function Argument

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
polyfun (Line 112)
bfilereader
Function Call
bfilereader.m
finemapper (Line 452)
bfilereader
Function Call
bgireader.m
fetchLDmat (Line 507)
bgireader
Function Call
colnames.m
finemapper (Line 279)
colnames
Function Call
colnames.m
prunesumstat (Line 613)
colnames
Function Call
createGWASheader.m
prunesumstat (Line 613)
createGWASheader
Function Call
dos2unix.m
polyfun (Line 141)
dos2unix
Function Call
dos2unix.m
fetchLDmat (Line 521)
dos2unix
Function Call
dos2unix.m
polyfun (Line 52)
dos2unix
Function Call
dos2unix.m
polyfun (Line 60)
dos2unix
Function Call
duplicates.m
prunesumstat (Line 624)
duplicates
Function Call
getInsampleLD.m
fetchLDmat (Line 512)
getInsampleLD
Function Call
getQCEID.m
fetchLDmat (Line 490)
getQCEID
Function Call
getfilenames.m
compPrior (Line 213)
getfilenames
Function Call
getfilenames.m
compPrior (Line 253)
getfilenames
Function Call
getfilenames.m
finemapper (Line 444)
getfilenames
Function Call
getfilenames.m
prunesumstat (Line 657)
getfilenames
Function Call
getfilenames.m
polyfun (Line 85)
getfilenames
Function Call
getfilenames.m
polyfun (Line 88)
getfilenames
Function Call
makeWSLpath.m
polyfun (Line 151)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 217)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 218)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 228)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 229)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 230)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 239)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 240)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 255)
makeWSLpath
Function Call
makeWSLpath.m
compPrior (Line 256)
makeWSLpath
Function Call
makeWSLpath.m
finemapper (Line 272)
makeWSLpath
Function Call
makeWSLpath.m
finemapper (Line 273)
makeWSLpath
Function Call
makeWSLpath.m
finemapper (Line 342)
makeWSLpath
Function Call
makeWSLpath.m
finemapper (Line 355)
makeWSLpath
Function Call
makeWSLpath.m
finemapper (Line 389)
makeWSLpath
Function Call
makeWSLpath.m
finemapper (Line 436)
makeWSLpath
Function Call
makeWSLpath.m
prunesumstat (Line 657)
makeWSLpath
Function Call
makeWSLpath.m
polyfun (Line 75)
makeWSLpath
Function Call
makeWSLpath.m
polyfun (Line 76)
makeWSLpath
Function Call
makeWSLpath.m
polyfun (Line 77)
makeWSLpath
Function Call
makeWSLpath.m
polyfun (Line 80)
makeWSLpath
Function Call
makeWSLpath.m
polyfun (Line 81)
makeWSLpath
Function Call
mergeStatFiles.m
prunesumstat (Line 718)
mergeStatFiles
Function Call
natsort.m
compPrior (Line 217)
natsort
Function Call
natsort.m
compPrior (Line 218)
natsort
Function Call
natsort.m
compPrior (Line 255)
natsort
Function Call
natsort.m
compPrior (Line 256)
natsort
Function Call
natsort.m
finemapper (Line 286)
natsort
Function Call
natsort.m
prunesumstat (Line 698)
natsort
Function Call
natsort.m
polyfun (Line 70)
natsort
Function Call
polyfun.m
polyfun (Line 26)
polyfun
Function Argument
polyfun.m
polyfun (Line 27)
polyfun
Function Argument
polyfun.m
polyfun (Line 31)
polyfun
Function Argument
polyfun.m
polyfun (Line 32)
polyfun
Function Argument
readGWASfile.m
prunesumstat (Line 611)
readGWASfile
Function Call
runbash.m
polyfun (Line 156)
runbash
Function Call
runbash.m
compPrior (Line 231)
runbash
Function Call
runbash.m
compPrior (Line 244)
runbash
Function Call
runbash.m
finemapper (Line 326)
runbash
Function Call
runbash.m
finemapper (Line 390)
runbash
Function Call
runbash.m
finemapper (Line 427)
runbash
Function Call
ss2fuma.m
prunesumstat (Line 731)
ss2fuma
Function Call
strshare.m
polyfun (Line 101)
strshare
Function Call
strshare.m
polyfun (Line 71)
strshare
Function Call
strshare.m
polyfun (Line 99)
strshare
Function Call
terminate
fetchLDmat (Line 496)
terminate
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
polyfun
Toolbox
Parallel Computing Toolbox
polyfun (Line 107)
Function Call
Parallel Computing Toolbox
polyfun (Line 108)
Function Call
Parallel Computing Toolbox
prunesumstat (Line 707)
Toolbox

pops.m

Path
D:\MAGE\dependencies\PoPS\pops.m
TypeFunction
Last modified07-Apr-2024 15:58:50
Size (bytes)3251

Required Files

FileImpactedRequiredDependency Type
Homo_sapiens.GRCh37.87.gtf.gene.mat
pops (Line 44)
Homo_sapiens.GRCh37.87.gtf.gene
Function Argument
dos2unix.m
pops (Line 54)
dos2unix
Function Call
getfilenames.m
pops (Line 26)
getfilenames
Function Call
makeWSLpath.m
pops (Line 37)
makeWSLpath
Function Call
pops.m
pops (Line 10)
pops
Function Argument
pops.m
pops (Line 9)
pops
Function Argument
runbash.m
pops (Line 63)
runbash
Function Call
runbash.m
pops (Line 78)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
pops
Toolbox

pops.m

Path
D:\MATLAB.dependencies\MAGE\PoPS\pops.m
TypeFunction
Last modified07-Apr-2024 15:58:50
Size (bytes)3251

Impacted Files

FileImpactedRequiredDependency Type
pops.m
pops (Line 10)
pops
Function Argument
pops.m
pops (Line 9)
pops
Function Argument
pops.m
pops (Line 10)
pops
Function Argument
pops.m
pops (Line 9)
pops
Function Argument

Required Files

FileImpactedRequiredDependency Type
Homo_sapiens.GRCh37.87.gtf.gene.mat
pops (Line 44)
Homo_sapiens.GRCh37.87.gtf.gene
Function Argument
dos2unix.m
pops (Line 54)
dos2unix
Function Call
getfilenames.m
pops (Line 26)
getfilenames
Function Call
makeWSLpath.m
pops (Line 37)
makeWSLpath
Function Call
pops.m
pops (Line 10)
pops
Function Argument
pops.m
pops (Line 9)
pops
Function Argument
runbash.m
pops (Line 63)
runbash
Function Call
runbash.m
pops (Line 78)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
pops
Toolbox

processManager.m

Path
D:\MAGE\source\processManager.m
TypeClass
Last modified18-May-2021 11:04:01
Size (bytes)22539

Required Files

FileImpactedRequiredDependency Type
linewrap
printStream (Line 589)
linewrap
Function Call
linewrap
printStream (Line 591)
linewrap
Function Call
processManager.m
start (Line 383)
processManager
Function Call
processManager.m
start (Line 384)
processManager
Function Call
processManager.m
start (Line 385)
processManager
Function Call
processManager.m
pollTimerStop (Line 506)
processManager
Function Call
processManager.m
poll (Line 516)
processManager
Function Call
processManager.m
poll (Line 517)
processManager
Function Call
processManager.m
poll (Line 531)
processManager
Function Call
processManager.m
poll (Line 534)
processManager
Function Call
processManager.m
poll (Line 545)
processManager
Function Call
processState.m
processManager (Line 179)
processState
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
processManager
Toolbox

processManager.m

Path
D:\MATLAB.dependencies\MAGE\processManager.m
TypeClass
Last modified18-May-2021 11:04:01
Size (bytes)22539

Impacted Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
MATLAB2Rconnector (Line 63)
processManager
Function Call
MATLAB2Rconnector.m
MATLAB2Rconnector (Line 69)
processManager
Function Call
processManager.m
start (Line 383)
processManager
Function Call
processManager.m
start (Line 384)
processManager
Function Call
processManager.m
start (Line 385)
processManager
Function Call
processManager.m
pollTimerStop (Line 506)
processManager
Function Call
processManager.m
poll (Line 516)
processManager
Function Call
processManager.m
poll (Line 517)
processManager
Function Call
processManager.m
poll (Line 531)
processManager
Function Call
processManager.m
poll (Line 534)
processManager
Function Call
processManager.m
poll (Line 545)
processManager
Function Call
processManager.m
start (Line 383)
processManager
Function Call
processManager.m
start (Line 384)
processManager
Function Call
processManager.m
start (Line 385)
processManager
Function Call
processManager.m
pollTimerStop (Line 506)
processManager
Function Call
processManager.m
poll (Line 516)
processManager
Function Call
processManager.m
poll (Line 517)
processManager
Function Call
processManager.m
poll (Line 531)
processManager
Function Call
processManager.m
poll (Line 534)
processManager
Function Call
processManager.m
poll (Line 545)
processManager
Function Call

Required Files

FileImpactedRequiredDependency Type
linewrap
printStream (Line 589)
linewrap
Function Call
linewrap
printStream (Line 591)
linewrap
Function Call
processManager.m
start (Line 383)
processManager
Function Call
processManager.m
start (Line 384)
processManager
Function Call
processManager.m
start (Line 385)
processManager
Function Call
processManager.m
pollTimerStop (Line 506)
processManager
Function Call
processManager.m
poll (Line 516)
processManager
Function Call
processManager.m
poll (Line 517)
processManager
Function Call
processManager.m
poll (Line 531)
processManager
Function Call
processManager.m
poll (Line 534)
processManager
Function Call
processManager.m
poll (Line 545)
processManager
Function Call
processState.m
processManager (Line 179)
processState
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
processManager
Toolbox

processState.m

Path
D:\MAGE\source\processState.m
TypeClass
Last modified18-May-2021 11:08:04
Size (bytes)994

Required Products

ProductImpactedDependency Type
MATLAB
processState
Toolbox

processState.m

Path
D:\MATLAB.dependencies\MAGE\processState.m
TypeClass
Last modified18-May-2021 11:08:04
Size (bytes)994

Impacted Files

FileImpactedRequiredDependency Type
processManager.m
processManager (Line 179)
processState
Function Call
processManager.m
processManager (Line 179)
processState
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
processState
Toolbox

progressGen.m

Path
D:\MAGE\source\progressGen.m
TypeFunction
Last modified08-Apr-2022 08:56:47
Size (bytes)1155

Required Products

ProductImpactedDependency Type
MATLAB
progressGen
Toolbox

progressGen.m

Path
D:\MATLAB.dependencies\MAGE\progressGen.m
TypeFunction
Last modified08-Apr-2022 08:56:47
Size (bytes)1155

Impacted Files

FileImpactedRequiredDependency Type
coloc.m
fetchEgeneFiles (Line 1082)
progressGen
Function Call
coloc.m
fetchEgeneFiles (Line 1089)
progressGen
Function Call
fetchHPA.m
fetchHPA (Line 49)
progressGen
Function Call
fetchHPA.m
fetchHPA (Line 70)
progressGen
Function Call
fetchHPA.m
fetchHPA (Line 49)
progressGen
Function Call
fetchHPA.m
fetchHPA (Line 70)
progressGen
Function Call
gwasrunner.m
gwasrunner (Line 1299)
progressGen
Function Call
gwasrunner.m
gwasrunner (Line 1302)
progressGen
Function Call
gwasrunner.m
gwasrunner (Line 1304)
progressGen
Function Call
gwasrunner.m
gwasrunner (Line 1347)
progressGen
Function Call
gwasrunner.m
gwasrunner (Line 1386)
progressGen
Function Call
gwasrunner.m
gwasrunner (Line 1409)
progressGen
Function Call
gwasrunner.m
gwasrunner (Line 1411)
progressGen
Function Call
gwasrunner.m
gwasrunner (Line 1436)
progressGen
Function Call
gwasrunner.m
runModels (Line 1729)
progressGen
Function Call
gwasrunner.m
runModels (Line 1829)
progressGen
Function Call
gwasrunner.m
runModels (Line 1890)
progressGen
Function Call
gwasrunner.m
runModels (Line 1895)
progressGen
Function Call
gwasrunner.m
runModels (Line 2002)
progressGen
Function Call
gwasrunner.m
scoretest (Line 2175)
progressGen
Function Call
gwasrunner.m
gwasrunner (Line 1299)
progressGen
Function Call
gwasrunner.m
gwasrunner (Line 1302)
progressGen
Function Call
gwasrunner.m
gwasrunner (Line 1304)
progressGen
Function Call
gwasrunner.m
gwasrunner (Line 1347)
progressGen
Function Call
gwasrunner.m
gwasrunner (Line 1386)
progressGen
Function Call
gwasrunner.m
gwasrunner (Line 1409)
progressGen
Function Call
gwasrunner.m
gwasrunner (Line 1411)
progressGen
Function Call
gwasrunner.m
gwasrunner (Line 1436)
progressGen
Function Call
gwasrunner.m
runModels (Line 1729)
progressGen
Function Call
gwasrunner.m
runModels (Line 1829)
progressGen
Function Call
gwasrunner.m
runModels (Line 1890)
progressGen
Function Call
gwasrunner.m
runModels (Line 1895)
progressGen
Function Call
gwasrunner.m
runModels (Line 2002)
progressGen
Function Call
gwasrunner.m
scoretest (Line 2175)
progressGen
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1608)
progressGen
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1612)
progressGen
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1608)
progressGen
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 1612)
progressGen
Function Call
trainCVmodels.m
trainModel (Line 929)
progressGen
Function Call
trainCVmodels.m
trainModel (Line 931)
progressGen
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
progressGen
Toolbox

protein_coding_genes_grch38.mat

Path
D:\MATLAB.dependencies\MAGE\REGENIE\step2.GENE\protein_coding_genes_grch38.mat
TypeMAT-file
Last modified12-Jul-2024 11:20:38
Size (bytes)222779

Impacted Files

FileImpactedRequiredDependency Type
call_geneWrapper.m
call_geneWrapper (Line 24)
protein_coding_genes_grch38
Function Argument
call_geneWrapper.m
call_geneWrapper (Line 24)
protein_coding_genes_grch38
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
protein_coding_genes_grch38
Toolbox

pruneFinemapRes.m

Path
D:\MAGE\dependencies\polyfun\pruneFinemapRes.m
TypeFunction
Last modified02-Feb-2022 13:08:31
Size (bytes)5848

Required Products

ProductImpactedDependency Type
MATLAB
pruneFinemapRes
Toolbox

pruneGeneBasedResults.m

Path
D:\MAGE\dependencies\REGENIE\pruneGeneBasedResults.m
TypeFunction
Last modified20-Jul-2024 15:51:10
Size (bytes)8324

Required Files

FileImpactedRequiredDependency Type
colnames.m
pruneGeneBasedResults (Line 10)
colnames
Function Call
colnames.m
pruneGeneBasedResults (Line 13)
colnames
Function Call
colnames.m
pruneGeneBasedResults (Line 19)
colnames
Function Call
struct2array.m
pruneGeneBasedResults (Line 145)
struct2array
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
pruneGeneBasedResults
Toolbox

pval2chi.m

Path
D:\MAGE\source\pval2chi.m
TypeFunction
Last modified06-Aug-2020 12:46:55
Size (bytes)354

Required Products

ProductImpactedDependency Type
MATLAB
pval2chi
Toolbox

pval2chi.m

Path
D:\MATLAB.dependencies\MAGE\pval2chi.m
TypeFunction
Last modified06-Aug-2020 12:46:55
Size (bytes)354

Impacted Files

FileImpactedRequiredDependency Type
meta_analysis.m
meta_analysis (Line 97)
pval2chi
Function Call
qq.m
getInflation (Line 174)
pval2chi
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
pval2chi
Toolbox

qctool.m

Path
D:\MAGE\dependencies\qctool\qctool.m
TypeFunction
Last modified01-Mar-2023 16:03:08
Size (bytes)399

Required Files

FileImpactedRequiredDependency Type
getfilenames.m
qctool (Line 9)
getfilenames
Function Call
makeWSLpath.m
qctool (Line 15)
makeWSLpath
Function Call
qctool.m
qctool (Line 5)
qctool
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
qctool
Toolbox

qctool.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\qctool\qctool.m
TypeFunction
Last modified01-Mar-2023 16:03:08
Size (bytes)399

Impacted Files

FileImpactedRequiredDependency Type
qctool.m
qctool (Line 5)
qctool
Function Argument
qctool.m
qctool (Line 5)
qctool
Function Argument

Required Files

FileImpactedRequiredDependency Type
getfilenames.m
qctool (Line 9)
getfilenames
Function Call
makeWSLpath.m
qctool (Line 15)
makeWSLpath
Function Call
qctool.m
qctool (Line 5)
qctool
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
qctool
Toolbox

qfc.cpp

Path
D:\MAGE\dependencies\qfc\qfc.cpp
TypeC++ Source
Last modified22-Apr-2022 09:55:44
Size (bytes)12291

Required Files

FileImpactedRequiredDependency Type
qfc.h
Line 6
qfc
C Source

Required Add-Ons

ToolboxImpactedDependency Type
C/C++ System Header
Line 1
C Source
C/C++ System Header
Line 2
C Source
C/C++ System Header
Line 3
C Source

qfc.h

Path
D:\MAGE\dependencies\qfc\qfc.h
TypeC/C++ Header
Last modified22-Apr-2022 09:57:57
Size (bytes)378

Impacted Files

FileImpactedRequiredDependency Type
qfc.cpp
Line 6
qfc
C Source

qfc.mlx

Path
D:\MAGE\dependencies\qfc\qfc.mlx
TypeLive Function
Last modified22-Apr-2022 09:37:20
Size (bytes)5372

Required Files

FileImpactedRequiredDependency Type
defineArgument
defineqfc (Line 100)
defineArgument
Function Call
defineArgument
defineqfc (Line 101)
defineArgument
Function Call
defineArgument
defineqfc (Line 102)
defineArgument
Function Call
defineArgument
defineqfc (Line 103)
defineArgument
Function Call
defineArgument
defineqfc (Line 104)
defineArgument
Function Call
defineArgument
defineqfc (Line 21)
defineArgument
Function Call
defineArgument
defineqfc (Line 28)
defineArgument
Function Call
defineArgument
defineqfc (Line 35)
defineArgument
Function Call
defineArgument
defineqfc (Line 36)
defineArgument
Function Call
defineArgument
defineqfc (Line 48)
defineArgument
Function Call
defineArgument
defineqfc (Line 49)
defineArgument
Function Call
defineArgument
defineqfc (Line 56)
defineArgument
Function Call
defineArgument
defineqfc (Line 57)
defineArgument
Function Call
defineArgument
defineqfc (Line 64)
defineArgument
Function Call
defineArgument
defineqfc (Line 65)
defineArgument
Function Call
defineArgument
defineqfc (Line 72)
defineArgument
Function Call
defineArgument
defineqfc (Line 73)
defineArgument
Function Call
defineArgument
defineqfc (Line 79)
defineArgument
Function Call
defineArgument
defineqfc (Line 80)
defineArgument
Function Call
defineArgument
defineqfc (Line 81)
defineArgument
Function Call
defineArgument
defineqfc (Line 82)
defineArgument
Function Call
defineArgument
defineqfc (Line 88)
defineArgument
Function Call
defineArgument
defineqfc (Line 95)
defineArgument
Function Call
defineArgument
defineqfc (Line 96)
defineArgument
Function Call
defineArgument
defineqfc (Line 97)
defineArgument
Function Call
defineArgument
defineqfc (Line 98)
defineArgument
Function Call
defineArgument
defineqfc (Line 99)
defineArgument
Function Call
defineArgument
defineqfc (Line 9)
defineArgument
Function Call
defineOutput
defineqfc (Line 105)
defineOutput
Function Call
defineOutput
defineqfc (Line 10)
defineOutput
Function Call
defineOutput
defineqfc (Line 22)
defineOutput
Function Call
defineOutput
defineqfc (Line 29)
defineOutput
Function Call
defineOutput
defineqfc (Line 37)
defineOutput
Function Call
defineOutput
defineqfc (Line 50)
defineOutput
Function Call
defineOutput
defineqfc (Line 58)
defineOutput
Function Call
defineOutput
defineqfc (Line 66)
defineOutput
Function Call
defineOutput
defineqfc (Line 89)
defineOutput
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
qfc
Toolbox

qq.m

Path
D:\MAGE\source\qq.m
TypeFunction
Last modified31-May-2025 14:37:51
Size (bytes)23329

Required Files

FileImpactedRequiredDependency Type
pval2chi.m
getInflation (Line 174)
pval2chi
Function Call
textRepel.m
addLabel2 (Line 230)
textRepel
Function Call

Required Products

ProductImpactedDependency Type
Bioinformatics Toolbox
qq (Line 118)
Function Call
MATLAB
qq
Toolbox
Mapping Toolbox
collisionCheck (Line 484)
Function Call
Optimization Toolbox
collisionCheck (Line 520)
Function Call
Optimization Toolbox
collisionCheck (Line 521)
Function Call
Statistics and Machine Learning Toolbox
qq (Line 100)
Function Call
Statistics and Machine Learning Toolbox
getInflation (Line 175)
Function Call
Statistics and Machine Learning Toolbox
qq (Line 99)
Function Call
Symbolic Math Toolbox
collisionCheck (Line 436)
Function Call

quickgo.m

Path
D:\MAGE\dependencies\Rwrappers\quickgo.m
TypeFunction
Last modified02-Feb-2023 12:29:44
Size (bytes)2436

Required Files

FileImpactedRequiredDependency Type
colnames.m
quickgo (Line 34)
colnames
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
quickgo
Toolbox

R2MAT.ci.txt

Problems

Impacted Files

FileImpactedRequiredDependency Type
meta_analysis.m
meta_analysis (Line 149)
R2MAT.ci
Function Argument

R2MAT.hetero.txt

Problems

Impacted Files

FileImpactedRequiredDependency Type
meta_analysis.m
meta_analysis (Line 146)
R2MAT.hetero
Function Argument

R2MAT.weights.txt

Problems

Impacted Files

FileImpactedRequiredDependency Type
meta_analysis.m
meta_analysis (Line 140)
R2MAT.weights
Function Argument

R2MATLABWrapper.m

Path
D:\MAGE\dependencies\Rutils\R2MATLABWrapper.m
TypeFunction
Last modified11-May-2023 09:54:24
Size (bytes)7171

Required Files

FileImpactedRequiredDependency Type
getRfuncArgs.m
R2MATLABWrapper (Line 19)
getRfuncArgs
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
R2MATLABWrapper
Toolbox

R2MAT_meta_analysis.txt

Problems

Impacted Files

FileImpactedRequiredDependency Type
meta_analysis.m
meta_analysis (Line 111)
R2MAT_meta_analysis
Function Argument

rarePlotter.m

Path
D:\MAGE\source\rarePlotter.m
TypeFunction
Last modified26-Nov-2024 15:50:18
Size (bytes)23123

Required Files

FileImpactedRequiredDependency Type
colnames.m
rarePlotter (Line 331)
colnames
Function Call
colnames.m
rarePlotter (Line 563)
colnames
Function Call
colnames.m
rarePlotter (Line 67)
colnames
Function Call
getCI.m
rarePlotter (Line 119)
getCI
Function Call
get_colormap.m
rarePlotter (Line 526)
get_colormap
Function Call
gnomad.m
rarePlotter (Line 170)
gnomad
Function Call
gnomad.m
rarePlotter (Line 187)
gnomad
Function Call
padjust.m
rarePlotter (Line 152)
padjust
Function Call
shade.m
rarePlotter (Line 569)
shade
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
rarePlotter
Toolbox

rarePlotter.m

Path
D:\MATLAB.dependencies\MAGE\rarePlotter.m
TypeFunction
Last modified26-Nov-2024 15:50:18
Size (bytes)23123

Impacted Files

FileImpactedRequiredDependency Type
gwasrunner.m
gwasrunner (Line 1476)
rarePlotter
Function Call
gwasrunner.m
gwasrunner (Line 1476)
rarePlotter
Function Call

Required Files

FileImpactedRequiredDependency Type
colnames.m
rarePlotter (Line 331)
colnames
Function Call
colnames.m
rarePlotter (Line 563)
colnames
Function Call
colnames.m
rarePlotter (Line 67)
colnames
Function Call
getCI.m
rarePlotter (Line 119)
getCI
Function Call
get_colormap.m
rarePlotter (Line 526)
get_colormap
Function Call
gnomad.m
rarePlotter (Line 170)
gnomad
Function Call
gnomad.m
rarePlotter (Line 187)
gnomad
Function Call
padjust.m
rarePlotter (Line 152)
padjust
Function Call
shade.m
rarePlotter (Line 569)
shade
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
rarePlotter
Toolbox

readGWASfile.m

Path
D:\MAGE\source\readGWASfile.m
TypeFunction
Last modified16-May-2025 15:01:56
Size (bytes)17523

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
readGWASfile (Line 271)
bfilereader
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
readGWASfile
Toolbox
Parallel Computing Toolbox
readGWASfile (Line 55)
Function Call
Parallel Computing Toolbox
readGWASfile (Line 63)
Function Call
Parallel Computing Toolbox
readGWASfile (Line 65)
Function Call

readGWASfile.m

Path
D:\MATLAB.dependencies\MAGE\readGWASfile.m
TypeFunction
Last modified16-May-2025 15:01:56
Size (bytes)17523

Impacted Files

FileImpactedRequiredDependency Type
SBayesRC.m
SBayesRC (Line 44)
readGWASfile
Function Call
SBayesRC.m
SBayesRC (Line 44)
readGWASfile
Function Call
coloc.m
coloc (Line 93)
readGWASfile
Function Call
gcta.m
gcta (Line 78)
readGWASfile
Function Call
gcta.m
gcta (Line 78)
readGWASfile
Function Call
ldclump.m
ldclump (Line 57)
readGWASfile
Function Call
ldclump.m
ldclump (Line 57)
readGWASfile
Function Call
ldclumpPeaks.m
ldclumpPeaks (Line 22)
readGWASfile
Function Call
ldclumpPeaks.m
ldclumpPeaks (Line 22)
readGWASfile
Function Call
manplotter.m
manplotter (Line 76)
readGWASfile
Function Call
polyfun.m
prunesumstat (Line 611)
readGWASfile
Function Call
polyfun.m
prunesumstat (Line 611)
readGWASfile
Function Call
regionalPlotter.m
regionalPlotter (Line 108)
readGWASfile
Function Call

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
readGWASfile (Line 271)
bfilereader
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
readGWASfile
Toolbox
Parallel Computing Toolbox
readGWASfile (Line 55)
Function Call
Parallel Computing Toolbox
readGWASfile (Line 63)
Function Call
Parallel Computing Toolbox
readGWASfile (Line 65)
Function Call

readRegenieGeneStat.m

Path
D:\MAGE\source\readRegenieGeneStat.m
TypeFunction
Last modified01-Nov-2022 12:35:26
Size (bytes)1885

Required Products

ProductImpactedDependency Type
MATLAB
readRegenieGeneStat
Toolbox

readRegenieGeneStat.m

Path
D:\MATLAB.dependencies\MAGE\readRegenieGeneStat.m
TypeFunction
Last modified01-Nov-2022 12:35:26
Size (bytes)1885

Impacted Files

FileImpactedRequiredDependency Type
call_regenie.m
call_regenie (Line 594)
readRegenieGeneStat
Function Call
call_regenie.m
call_regenie (Line 602)
readRegenieGeneStat
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
readRegenieGeneStat
Toolbox

readvcf.m

Path
D:\MAGE\source\readvcf.m
TypeFunction
Last modified31-May-2025 14:38:38
Size (bytes)5553

Required Files

FileImpactedRequiredDependency Type
bcftools.m
readvcf (Line 46)
bcftools
Function Call
bcftools.m
readvcf (Line 59)
bcftools
Function Call
bcftools.m
readvcf (Line 63)
bcftools
Function Call
colnames.m
readvcf (Line 108)
colnames
Function Call
colnames.m
readvcf (Line 88)
colnames
Function Call
getRandomName.m
readvcf (Line 36)
getRandomName
Function Call
getfilenames.m
readvcf (Line 22)
getfilenames
Function Call
getfilenames.m
readvcf (Line 24)
getfilenames
Function Call
makeWSLpath.m
readvcf (Line 37)
makeWSLpath
Function Call
makeWSLpath.m
readvcf (Line 45)
makeWSLpath
Function Call
makeWSLpath.m
readvcf (Line 59)
makeWSLpath
Function Call
makeWSLpath.m
readvcf (Line 63)
makeWSLpath
Function Call
runbash.m
readvcf (Line 53)
runbash
Function Call
runbash.m
readvcf (Line 64)
runbash
Function Call
strshare.m
readvcf (Line 29)
strshare
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
readvcf
Toolbox

regenie.m

Path
D:\MAGE\dependencies\REGENIE\regenie.m
TypeFunction
Last modified18-Nov-2024 12:34:18
Size (bytes)13176

Required Files

FileImpactedRequiredDependency Type
dos2unix.m
regenie (Line 120)
dos2unix
Function Call
makeWSLpath.m
regenie (Line 118)
makeWSLpath
Function Call
makeWSLpath.m
regenie (Line 125)
makeWSLpath
Function Call
makeWSLpath.m
regenie (Line 211)
makeWSLpath
Function Call
regenie.m
regenie (Line 210)
regenie
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
regenie
Toolbox

regenie.m

Path
D:\MATLAB.dependencies\MAGE\REGENIE\regenie.m
TypeFunction
Last modified18-Nov-2024 12:34:18
Size (bytes)13176

Impacted Files

FileImpactedRequiredDependency Type
call_regenie.m
call_regenie (Line 409)
regenie
Function Call
call_regenie.m
call_regenie (Line 412)
regenie
Function Call
call_regenie.m
getREGENIEcmd (Line 789)
regenie
Function Call
call_regenie.m
getREGENIEcmd (Line 794)
regenie
Function Call
call_regenie.m
call_regenie (Line 409)
regenie
Function Call
call_regenie.m
call_regenie (Line 412)
regenie
Function Call
call_regenie.m
getREGENIEcmd (Line 797)
regenie
Function Call
call_regenie.m
getREGENIEcmd (Line 802)
regenie
Function Call
regenie.m
regenie (Line 210)
regenie
Function Argument
regenie.m
regenie (Line 210)
regenie
Function Argument

Required Files

FileImpactedRequiredDependency Type
dos2unix.m
regenie (Line 120)
dos2unix
Function Call
makeWSLpath.m
regenie (Line 118)
makeWSLpath
Function Call
makeWSLpath.m
regenie (Line 125)
makeWSLpath
Function Call
makeWSLpath.m
regenie (Line 211)
makeWSLpath
Function Call
regenie.m
regenie (Line 210)
regenie
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
regenie
Toolbox

regionalPlotter.m

Path
D:\MAGE\source\regionalPlotter.m
TypeFunction
Last modified06-Apr-2023 13:40:46
Size (bytes)8227

Required Files

FileImpactedRequiredDependency Type
colnames.m
regionalPlotter (Line 107)
colnames
Function Call
colnames.m
regionalPlotter (Line 117)
colnames
Function Call
colnames.m
regionalPlotter (Line 78)
colnames
Function Call
colnames.m
regionalPlotter (Line 85)
colnames
Function Call
colnames.m
regionalPlotter (Line 87)
colnames
Function Call
createGWASheader.m
regionalPlotter (Line 107)
createGWASheader
Function Call
createGWASheader.m
regionalPlotter (Line 117)
createGWASheader
Function Call
createGWASheader.m
regionalPlotter (Line 85)
createGWASheader
Function Call
genePlotter.m
regionalPlotter (Line 212)
genePlotter
Function Call
mapVariant2gene.m
regionalPlotter (Line 88)
mapVariant2gene
Function Call
readGWASfile.m
regionalPlotter (Line 108)
readGWASfile
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
regionalPlotter
Toolbox
Parallel Computing Toolbox
regionalPlotter (Line 35)
Function Call
Parallel Computing Toolbox
regionalPlotter (Line 43)
Function Call
Parallel Computing Toolbox
regionalPlotter (Line 45)
Function Call

removeCovarEffect.m

Path
D:\MAGE\source\removeCovarEffect.m
TypeFunction
Last modified07-Oct-2024 19:14:08
Size (bytes)2151

Required Products

ProductImpactedDependency Type
MATLAB
removeCovarEffect
Toolbox
Statistics and Machine Learning Toolbox
removeCovarEffect (Line 46)
Function Call

removeCovarEffect.m

Path
D:\MATLAB.dependencies\MAGE\removeCovarEffect.m
TypeFunction
Last modified07-Oct-2024 19:14:08
Size (bytes)2151

Impacted Files

FileImpactedRequiredDependency Type
trainCVmodels.m
trainCVmodels (Line 254)
removeCovarEffect
Function Call
trainCVmodels.m
trainCVmodels (Line 255)
removeCovarEffect
Function Call
trainCVmodels.m
trainCVmodels (Line 256)
removeCovarEffect
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
removeCovarEffect
Toolbox
Statistics and Machine Learning Toolbox
removeCovarEffect (Line 46)
Function Call

RfncArgs_4matlab.txt

Problems

Impacted Files

FileImpactedRequiredDependency Type
getRfuncArgs.m
getRfuncArgs (Line 23)
RfncArgs_4matlab
Function Argument
getRfuncArgs.m
getRfuncArgs (Line 23)
RfncArgs_4matlab
Function Argument

RfncContent_4matlab.txt

Problems

Impacted Files

FileImpactedRequiredDependency Type
getRfuncArgs.m
getRfuncArgs (Line 33)
RfncContent_4matlab
Function Argument
getRfuncArgs.m
getRfuncArgs (Line 33)
RfncContent_4matlab
Function Argument

rgb2hex.m

Path
D:\MAGE\source\rgb2hex.m
TypeFunction
Last modified24-Feb-2023 13:42:49
Size (bytes)321

Required Products

ProductImpactedDependency Type
MATLAB
rgb2hex
Toolbox

rgb2hex.m

Path
D:\MATLAB.dependencies\MAGE\rgb2hex.m
TypeFunction
Last modified24-Feb-2023 13:42:49
Size (bytes)321

Impacted Files

FileImpactedRequiredDependency Type
gcorrplot.m
gcorrplot (Line 82)
rgb2hex
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
rgb2hex
Toolbox

ribocure.m

Path
D:\MATLAB.dependencies\MAGE\ribocure.m
TypeFunction
Last modified23-May-2025 12:14:00
Size (bytes)59506

Impacted Files

FileImpactedRequiredDependency Type
gwasCaller.m
gwasCaller (Line 74)
ribocure
Function Argument
gwasCaller.m
gwasCaller (Line 75)
ribocure
Function Argument
ribocure.m
ribocure (Line 63)
ribocure
Function Argument
ribocure.m
ribocure (Line 72)
ribocure
Function Argument
ribocure.m
ribocure (Line 73)
ribocure
Function Argument

Required Files

FileImpactedRequiredDependency Type
EnsemblREST.m
ribocure (Line 191)
EnsemblREST
Function Call
MATLAB2Rconnector.m
makeReport (Line 1212)
MATLAB2Rconnector
Function Call
addAttachedFiles
gene_based_tests (Line 657)
addAttachedFiles
Function Call
bfilereader.m
gene_based_tests (Line 653)
bfilereader
Function Argument
colnames.m
mergeDifferentGSSFolders (Line 1283)
colnames
Function Call
colnames.m
runPheWas (Line 471)
colnames
Function Call
duplicates.m
mergeDifferentGSSFolders (Line 1261)
duplicates
Function Call
genePlotter.m
call_genePlotter (Line 540)
genePlotter
Function Call
getRandomName.m
gene_based_tests (Line 643)
getRandomName
Function Call
getfilenames.m
makeReport (Line 1032)
getfilenames
Function Call
getfilenames.m
makeReport (Line 1073)
getfilenames
Function Call
getfilenames.m
makeReport (Line 1174)
getfilenames
Function Call
getfilenames.m
mergeDifferentGSSFolders (Line 1237)
getfilenames
Function Call
getfilenames.m
mergeDifferentGSSFolders (Line 1240)
getfilenames
Function Call
getfilenames.m
runPheWas (Line 441)
getfilenames
Function Call
getfilenames.m
runPheWas (Line 464)
getfilenames
Function Call
getfilenames.m
gene_based_tests (Line 608)
getfilenames
Function Call
getfilenames.m
gene_based_tests (Line 761)
getfilenames
Function Call
gwasrunner.m
ribocure (Line 307)
gwasrunner
Function Call
gwasrunner.m
runPheWas (Line 455)
gwasrunner
Function Call
gwasrunner.m
runPheWas (Line 489)
gwasrunner
Function Call
gwasrunner.m
gene_based_tests (Line 697)
gwasrunner
Function Argument
gwasrunner.m
gene_based_tests (Line 698)
gwasrunner
Function Argument
gwasrunner.m
gene_based_tests (Line 699)
gwasrunner
Function Argument
gwasrunner.m
gene_based_tests (Line 704)
gwasrunner
Function Call
ribocure.m
ribocure (Line 63)
ribocure
Function Argument
ribocure.m
ribocure (Line 72)
ribocure
Function Argument
ribocure.m
ribocure (Line 73)
ribocure
Function Argument
strshare.m
gene_based_tests (Line 612)
strshare
Function Call
strshare.m
gene_based_tests (Line 613)
strshare
Function Call
strshare.m
gene_based_tests (Line 614)
strshare
Function Call
ukb22828_cX_b0_v3.mfi.maf005.info7.mat
ribocure (Line 260)
ukb22828_cX_b0_v3.mfi.maf005.info7
Function Argument

Required Products

ProductImpactedDependency Type
Bioinformatics Toolbox
ribocure (Line 324)
Function Call
Bioinformatics Toolbox
runPheWas (Line 476)
Function Call
Bioinformatics Toolbox
runPheWas (Line 497)
Function Call
MATLAB
ribocure
Toolbox
Parallel Computing Toolbox
ribocure (Line 112)
Function Call
Parallel Computing Toolbox
ribocure (Line 113)
Function Call
Parallel Computing Toolbox
gene_based_tests (Line 655)
Function Call
Parallel Computing Toolbox
gene_based_tests (Line 657)
Function Call

RoadMap_ENTEX_Finuacane2018_supp7.mat

Path
D:\MATLAB.dependencies\MAGE\ldsc\RoadMap_ENTEX_Finuacane2018_supp7.mat
TypeMAT-file
Last modified23-Feb-2023 15:39:15
Size (bytes)4288

Impacted Files

FileImpactedRequiredDependency Type
parseEpirr.m
parseEpirr (Line 6)
RoadMap_ENTEX_Finuacane2018_supp7
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
RoadMap_ENTEX_Finuacane2018_supp7
Toolbox

Rpam.m

Path
D:\MAGE\dependencies\Rwrappers\Rpam.m
TypeFunction
Last modified30-May-2025 16:07:34
Size (bytes)8906

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
Rpam (Line 159)
MATLAB2Rconnector
Function Call
colnames.m
Rpam (Line 95)
colnames
Function Call
getRandomName.m
Rpam (Line 82)
getRandomName
Function Call
struct2rfun.m
Rpam (Line 126)
struct2rfun
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
Rpam
Toolbox

runbash.m

Path
D:\MAGE\source\runbash.m
TypeFunction
Last modified31-May-2025 15:39:58
Size (bytes)4764

Required Files

FileImpactedRequiredDependency Type
makeWSLpath.m
runbash (Line 27)
makeWSLpath
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
runbash
Toolbox

runbash.m

Path
D:\MATLAB.dependencies\MAGE\runbash.m
TypeFunction
Last modified07-Nov-2024 11:06:00
Size (bytes)4795

Impacted Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
MATLAB2Rconnector (Line 34)
runbash
Function Call
MATLAB2Rconnector.m
MATLAB2Rconnector (Line 34)
runbash
Function Call
SBayesRC.m
SBayesRC (Line 128)
runbash
Function Call
SBayesRC.m
SBayesRC (Line 150)
runbash
Function Call
SBayesRC.m
SBayesRC (Line 128)
runbash
Function Call
SBayesRC.m
SBayesRC (Line 150)
runbash
Function Call
addIDtoGWASfile.m
addIDtoGWASfile (Line 57)
runbash
Function Call
addIDtoGWASfile.m
addIDtoGWASfile (Line 67)
runbash
Function Call
call_regenie.m
call_regenie (Line 510)
runbash
Function Call
call_regenie.m
call_regenie (Line 517)
runbash
Function Call
call_regenie.m
call_regenie (Line 510)
runbash
Function Call
call_regenie.m
call_regenie (Line 525)
runbash
Function Call
changeColnames.m
changeColnames (Line 80)
runbash
Function Call
changeColnames.m
changeColnames (Line 80)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 145)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 147)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 152)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 211)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 256)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 258)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 26)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 291)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 320)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 340)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 355)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 412)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 416)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 145)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 147)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 152)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 211)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 256)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 258)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 26)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 291)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 320)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 340)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 355)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 412)
runbash
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 416)
runbash
Function Call
fastWriteTable.m
fastWriteTable (Line 40)
runbash
Function Call
fastWriteTable.m
fastWriteTable (Line 45)
runbash
Function Call
fastWriteTable.m
fastWriteTable (Line 40)
runbash
Function Call
fastWriteTable.m
fastWriteTable (Line 45)
runbash
Function Call
filterFileRows.m
filterFileRows (Line 170)
runbash
Function Call
filterFileRows.m
filterFileRows (Line 170)
runbash
Function Call
filterline.m
filterline (Line 53)
runbash
Function Call
filterline.m
filterline (Line 53)
runbash
Function Call
getUKBdictionary.m
getUKBdictionary (Line 50)
runbash
Function Call
getUKBdictionary.m
getUKBdictionary (Line 51)
runbash
Function Call
getUKBdictionary.m
getUKBdictionary (Line 56)
runbash
Function Call
getUKBdictionary.m
getUKBdictionary (Line 65)
runbash
Function Call
getUKBdictionary.m
getUKBdictionary (Line 50)
runbash
Function Call
getUKBdictionary.m
getUKBdictionary (Line 51)
runbash
Function Call
getUKBdictionary.m
getUKBdictionary (Line 56)
runbash
Function Call
getUKBdictionary.m
getUKBdictionary (Line 65)
runbash
Function Call
joinFileCols.m
joinFileCols (Line 157)
runbash
Function Call
joinFileCols.m
joinFileCols (Line 57)
runbash
Function Call
joinFileCols.m
joinFileCols (Line 157)
runbash
Function Call
joinFileCols.m
joinFileCols (Line 57)
runbash
Function Call
ldsc.m
ldsc (Line 251)
runbash
Function Call
ldsc.m
munge_sumstats (Line 278)
runbash
Function Call
ldsc.m
munge_sumstats (Line 288)
runbash
Function Call
mergeFiles.m
mergeFiles (Line 67)
runbash
Function Call
mergeFiles.m
mergeFiles (Line 67)
runbash
Function Call
mergeStatFiles.m
mergeStatFiles (Line 57)
runbash
Function Call
mergeStatFiles.m
mergeStatFiles (Line 57)
runbash
Function Call
metal.m
metal (Line 119)
runbash
Function Call
metal.m
metal (Line 159)
runbash
Function Call
metal.m
metal (Line 119)
runbash
Function Call
metal.m
metal (Line 159)
runbash
Function Call
mtag.m
munge_sumstats (Line 149)
runbash
Function Call
mtag.m
munge_sumstats (Line 167)
runbash
Function Call
mtag.m
mtag (Line 84)
runbash
Function Call
mtag.m
munge_sumstats (Line 149)
runbash
Function Call
mtag.m
munge_sumstats (Line 167)
runbash
Function Call
mtag.m
mtag (Line 84)
runbash
Function Call
polyfun.m
polyfun (Line 156)
runbash
Function Call
polyfun.m
compPrior (Line 231)
runbash
Function Call
polyfun.m
compPrior (Line 244)
runbash
Function Call
polyfun.m
finemapper (Line 326)
runbash
Function Call
polyfun.m
finemapper (Line 390)
runbash
Function Call
polyfun.m
finemapper (Line 427)
runbash
Function Call
polyfun.m
polyfun (Line 156)
runbash
Function Call
polyfun.m
compPrior (Line 231)
runbash
Function Call
polyfun.m
compPrior (Line 244)
runbash
Function Call
polyfun.m
finemapper (Line 326)
runbash
Function Call
polyfun.m
finemapper (Line 390)
runbash
Function Call
polyfun.m
finemapper (Line 427)
runbash
Function Call
pops.m
pops (Line 63)
runbash
Function Call
pops.m
pops (Line 78)
runbash
Function Call
pops.m
pops (Line 63)
runbash
Function Call
pops.m
pops (Line 78)
runbash
Function Call
readvcf.m
readvcf (Line 53)
runbash
Function Call
readvcf.m
readvcf (Line 64)
runbash
Function Call
runVEP.m
runVEP (Line 98)
runbash
Function Call
ss2fuma.m
ss2fuma (Line 50)
runbash
Function Call
ss2fuma.m
ss2fuma (Line 75)
runbash
Function Call
ss2fuma.m
ss2fuma (Line 50)
runbash
Function Call
ss2fuma.m
ss2fuma (Line 75)
runbash
Function Call

Required Files

FileImpactedRequiredDependency Type
makeWSLpath.m
runbash (Line 27)
makeWSLpath
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
runbash
Toolbox

runVEP.m

Path
D:\MAGE\dependencies\VEP\runVEP.m
TypeFunction
Last modified30-May-2025 17:08:28
Size (bytes)10519

Required Files

FileImpactedRequiredDependency Type
colnames.m
vepParser (Line 250)
colnames
Function Call
dos2unix.m
runVEP (Line 95)
dos2unix
Function Call
duplicates.m
vepParser (Line 236)
duplicates
Function Call
makeWSLpath.m
runVEP (Line 46)
makeWSLpath
Function Call
makeWSLpath.m
runVEP (Line 49)
makeWSLpath
Function Call
makeWSLpath.m
runVEP (Line 95)
makeWSLpath
Function Call
makeWSLpath.m
runVEP (Line 96)
makeWSLpath
Function Call
natsort.m
runVEP (Line 123)
natsort
Function Call
runbash.m
runVEP (Line 98)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
runVEP
Toolbox
Parallel Computing Toolbox
runVEP (Line 83)
Function Call
Parallel Computing Toolbox
runVEP (Line 84)
Function Call

run_bNMF.m

Path
D:\MAGE\dependencies\Rwrappers\bNMF\run_bNMF.m
TypeFunction
Last modified23-Mar-2024 20:08:13
Size (bytes)17984

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
run_bNMF (Line 303)
MATLAB2Rconnector
Function Call
colnames.m
run_bNMF (Line 60)
colnames
Function Call
getRandomName.m
run_bNMF (Line 52)
getRandomName
Function Call
run_bNMF.m
run_bNMF (Line 22)
run_bNMF
Function Argument
run_bNMF.m
run_bNMF (Line 23)
run_bNMF
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
run_bNMF
Toolbox

run_bNMF.m

Path
D:\MATLAB.dependencies\MAGE\Rwrappers\bNMF\run_bNMF.m
TypeFunction
Last modified23-Mar-2024 20:08:13
Size (bytes)17984

Impacted Files

FileImpactedRequiredDependency Type
run_bNMF.m
run_bNMF (Line 22)
run_bNMF
Function Argument
run_bNMF.m
run_bNMF (Line 23)
run_bNMF
Function Argument
run_bNMF.m
run_bNMF (Line 22)
run_bNMF
Function Argument
run_bNMF.m
run_bNMF (Line 23)
run_bNMF
Function Argument

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
run_bNMF (Line 303)
MATLAB2Rconnector
Function Call
colnames.m
run_bNMF (Line 60)
colnames
Function Call
getRandomName.m
run_bNMF (Line 52)
getRandomName
Function Call
run_bNMF.m
run_bNMF (Line 22)
run_bNMF
Function Argument
run_bNMF.m
run_bNMF (Line 23)
run_bNMF
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
run_bNMF
Toolbox

savebj.m

Path
D:\MAGE\dependencies\JSONLab\savebj.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)33942

Required Files

FileImpactedRequiredDependency Type
base64decode.m
savebj (Line 180)
base64decode
Function Call
decodevarname.m
cell2ubjson (Line 342)
decodevarname
Function Call
decodevarname.m
cell2ubjson (Line 348)
decodevarname
Function Call
decodevarname.m
struct2ubjson (Line 400)
decodevarname
Function Call
decodevarname.m
struct2ubjson (Line 422)
decodevarname
Function Call
decodevarname.m
map2ubjson (Line 463)
decodevarname
Function Call
decodevarname.m
str2ubjson (Line 497)
decodevarname
Function Call
decodevarname.m
str2ubjson (Line 507)
decodevarname
Function Call
decodevarname.m
mat2ubjson (Line 550)
decodevarname
Function Call
decodevarname.m
mat2ubjson (Line 553)
decodevarname
Function Call
decodevarname.m
mat2ubjson (Line 563)
decodevarname
Function Call
decodevarname.m
mat2ubjson (Line 565)
decodevarname
Function Call
encodevarname.m
struct2ubjson (Line 388)
encodevarname
Function Call
isoctavemesh.m
savebj (Line 151)
isoctavemesh
Function Call
jdataencode.m
savebj (Line 168)
jdataencode
Function Call
jdataencode.m
obj2ubjson (Line 301)
jdataencode
Function Call
jsonopt.m
savebj (Line 152)
jsonopt
Function Call
jsonopt.m
savebj (Line 153)
jsonopt
Function Call
jsonopt.m
savebj (Line 154)
jsonopt
Function Call
jsonopt.m
savebj (Line 155)
jsonopt
Function Call
jsonopt.m
savebj (Line 156)
jsonopt
Function Call
jsonopt.m
savebj (Line 157)
jsonopt
Function Call
jsonopt.m
savebj (Line 158)
jsonopt
Function Call
jsonopt.m
savebj (Line 159)
jsonopt
Function Call
jsonopt.m
savebj (Line 160)
jsonopt
Function Call
jsonopt.m
savebj (Line 161)
jsonopt
Function Call
jsonopt.m
savebj (Line 163)
jsonopt
Function Call
jsonopt.m
savebj (Line 164)
jsonopt
Function Call
jsonopt.m
savebj (Line 167)
jsonopt
Function Call
jsonopt.m
savebj (Line 228)
jsonopt
Function Call
jsonopt.m
savebj (Line 254)
jsonopt
Function Call
jsonopt.m
savebj (Line 260)
jsonopt
Function Call
jsonopt.m
savebj (Line 262)
jsonopt
Function Call
jsonopt.m
savebj (Line 263)
jsonopt
Function Call
jsonopt.m
savebj (Line 265)
jsonopt
Function Call
varargin2struct.m
savebj (Line 148)
varargin2struct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
savebj
Toolbox

savebj.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\savebj.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)33942

Impacted Files

FileImpactedRequiredDependency Type
jsave.m
jsave (Line 92)
savebj
Function Call
savemsgpack.m
savemsgpack (Line 26)
savebj
Function Call
savemsgpack.m
savemsgpack (Line 28)
savebj
Function Call
savemsgpack.m
savemsgpack (Line 30)
savebj
Function Call
savemsgpack.m
savemsgpack (Line 26)
savebj
Function Call
savemsgpack.m
savemsgpack (Line 28)
savebj
Function Call
savemsgpack.m
savemsgpack (Line 30)
savebj
Function Call
saveubjson.m
saveubjson (Line 66)
savebj
Function Call
saveubjson.m
saveubjson (Line 68)
savebj
Function Call
saveubjson.m
saveubjson (Line 70)
savebj
Function Call

Required Files

FileImpactedRequiredDependency Type
base64decode.m
savebj (Line 180)
base64decode
Function Call
decodevarname.m
cell2ubjson (Line 342)
decodevarname
Function Call
decodevarname.m
cell2ubjson (Line 348)
decodevarname
Function Call
decodevarname.m
struct2ubjson (Line 400)
decodevarname
Function Call
decodevarname.m
struct2ubjson (Line 422)
decodevarname
Function Call
decodevarname.m
map2ubjson (Line 463)
decodevarname
Function Call
decodevarname.m
str2ubjson (Line 497)
decodevarname
Function Call
decodevarname.m
str2ubjson (Line 507)
decodevarname
Function Call
decodevarname.m
mat2ubjson (Line 550)
decodevarname
Function Call
decodevarname.m
mat2ubjson (Line 553)
decodevarname
Function Call
decodevarname.m
mat2ubjson (Line 563)
decodevarname
Function Call
decodevarname.m
mat2ubjson (Line 565)
decodevarname
Function Call
encodevarname.m
struct2ubjson (Line 388)
encodevarname
Function Call
isoctavemesh.m
savebj (Line 151)
isoctavemesh
Function Call
jdataencode.m
savebj (Line 168)
jdataencode
Function Call
jdataencode.m
obj2ubjson (Line 301)
jdataencode
Function Call
jsonopt.m
savebj (Line 152)
jsonopt
Function Call
jsonopt.m
savebj (Line 153)
jsonopt
Function Call
jsonopt.m
savebj (Line 154)
jsonopt
Function Call
jsonopt.m
savebj (Line 155)
jsonopt
Function Call
jsonopt.m
savebj (Line 156)
jsonopt
Function Call
jsonopt.m
savebj (Line 157)
jsonopt
Function Call
jsonopt.m
savebj (Line 158)
jsonopt
Function Call
jsonopt.m
savebj (Line 159)
jsonopt
Function Call
jsonopt.m
savebj (Line 160)
jsonopt
Function Call
jsonopt.m
savebj (Line 161)
jsonopt
Function Call
jsonopt.m
savebj (Line 163)
jsonopt
Function Call
jsonopt.m
savebj (Line 164)
jsonopt
Function Call
jsonopt.m
savebj (Line 167)
jsonopt
Function Call
jsonopt.m
savebj (Line 228)
jsonopt
Function Call
jsonopt.m
savebj (Line 254)
jsonopt
Function Call
jsonopt.m
savebj (Line 260)
jsonopt
Function Call
jsonopt.m
savebj (Line 262)
jsonopt
Function Call
jsonopt.m
savebj (Line 263)
jsonopt
Function Call
jsonopt.m
savebj (Line 265)
jsonopt
Function Call
varargin2struct.m
savebj (Line 148)
varargin2struct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
savebj
Toolbox

savejson.m

Path
D:\MAGE\dependencies\JSONLab\savejson.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)27958

Required Files

FileImpactedRequiredDependency Type
OCTAVE_VERSION
escapejsonstring (Line 779)
OCTAVE_VERSION
Function Call
base64decode.m
savejson (Line 174)
base64decode
Function Call
base64encode.m
mat2json (Line 611)
base64encode
Function Call
base64encode.m
mat2json (Line 643)
base64encode
Function Call
base64encode.m
any2json (Line 761)
base64encode
Function Call
decodevarname.m
cell2json (Line 315)
decodevarname
Function Call
decodevarname.m
cell2json (Line 321)
decodevarname
Function Call
decodevarname.m
struct2json (Line 364)
decodevarname
Function Call
decodevarname.m
struct2json (Line 373)
decodevarname
Function Call
decodevarname.m
struct2json (Line 387)
decodevarname
Function Call
decodevarname.m
map2json (Line 461)
decodevarname
Function Call
decodevarname.m
map2json (Line 470)
decodevarname
Function Call
decodevarname.m
str2json (Line 511)
decodevarname
Function Call
decodevarname.m
str2json (Line 519)
decodevarname
Function Call
decodevarname.m
str2json (Line 525)
decodevarname
Function Call
decodevarname.m
mat2json (Line 566)
decodevarname
Function Call
decodevarname.m
mat2json (Line 574)
decodevarname
Function Call
decodevarname.m
mat2json (Line 576)
decodevarname
Function Call
encodevarname.m
struct2json (Line 358)
encodevarname
Function Call
encodevarname.m
struct2json (Line 394)
encodevarname
Function Call
isoctavemesh.m
savejson (Line 140)
isoctavemesh
Function Call
jdataencode.m
savejson (Line 162)
jdataencode
Function Call
jdataencode.m
obj2json (Line 278)
jdataencode
Function Call
jsonopt.m
savejson (Line 142)
jsonopt
Function Call
jsonopt.m
savejson (Line 143)
jsonopt
Function Call
jsonopt.m
savejson (Line 144)
jsonopt
Function Call
jsonopt.m
savejson (Line 145)
jsonopt
Function Call
jsonopt.m
savejson (Line 146)
jsonopt
Function Call
jsonopt.m
savejson (Line 147)
jsonopt
Function Call
jsonopt.m
savejson (Line 148)
jsonopt
Function Call
jsonopt.m
savejson (Line 149)
jsonopt
Function Call
jsonopt.m
savejson (Line 150)
jsonopt
Function Call
jsonopt.m
savejson (Line 151)
jsonopt
Function Call
jsonopt.m
savejson (Line 152)
jsonopt
Function Call
jsonopt.m
savejson (Line 153)
jsonopt
Function Call
jsonopt.m
savejson (Line 154)
jsonopt
Function Call
jsonopt.m
savejson (Line 155)
jsonopt
Function Call
jsonopt.m
savejson (Line 156)
jsonopt
Function Call
jsonopt.m
savejson (Line 157)
jsonopt
Function Call
jsonopt.m
savejson (Line 161)
jsonopt
Function Call
jsonopt.m
savejson (Line 187)
jsonopt
Function Call
jsonopt.m
savejson (Line 222)
jsonopt
Function Call
jsonopt.m
savejson (Line 228)
jsonopt
Function Call
jsonopt.m
savejson (Line 230)
jsonopt
Function Call
jsonopt.m
savejson (Line 231)
jsonopt
Function Call
jsonopt.m
savejson (Line 233)
jsonopt
Function Call
jsonopt.m
savejson (Line 236)
jsonopt
Function Call
varargin2struct.m
savejson (Line 137)
varargin2struct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
savejson
Toolbox

savejson.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\savejson.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)27958

Impacted Files

FileImpactedRequiredDependency Type
jsave.m
jsave (Line 94)
savejson
Function Call
jsave.m
jsave (Line 96)
savejson
Function Call

Required Files

FileImpactedRequiredDependency Type
OCTAVE_VERSION
escapejsonstring (Line 779)
OCTAVE_VERSION
Function Call
base64decode.m
savejson (Line 174)
base64decode
Function Call
base64encode.m
mat2json (Line 611)
base64encode
Function Call
base64encode.m
mat2json (Line 643)
base64encode
Function Call
base64encode.m
any2json (Line 761)
base64encode
Function Call
decodevarname.m
cell2json (Line 315)
decodevarname
Function Call
decodevarname.m
cell2json (Line 321)
decodevarname
Function Call
decodevarname.m
struct2json (Line 364)
decodevarname
Function Call
decodevarname.m
struct2json (Line 373)
decodevarname
Function Call
decodevarname.m
struct2json (Line 387)
decodevarname
Function Call
decodevarname.m
map2json (Line 461)
decodevarname
Function Call
decodevarname.m
map2json (Line 470)
decodevarname
Function Call
decodevarname.m
str2json (Line 511)
decodevarname
Function Call
decodevarname.m
str2json (Line 519)
decodevarname
Function Call
decodevarname.m
str2json (Line 525)
decodevarname
Function Call
decodevarname.m
mat2json (Line 566)
decodevarname
Function Call
decodevarname.m
mat2json (Line 574)
decodevarname
Function Call
decodevarname.m
mat2json (Line 576)
decodevarname
Function Call
encodevarname.m
struct2json (Line 358)
encodevarname
Function Call
encodevarname.m
struct2json (Line 394)
encodevarname
Function Call
isoctavemesh.m
savejson (Line 140)
isoctavemesh
Function Call
jdataencode.m
savejson (Line 162)
jdataencode
Function Call
jdataencode.m
obj2json (Line 278)
jdataencode
Function Call
jsonopt.m
savejson (Line 142)
jsonopt
Function Call
jsonopt.m
savejson (Line 143)
jsonopt
Function Call
jsonopt.m
savejson (Line 144)
jsonopt
Function Call
jsonopt.m
savejson (Line 145)
jsonopt
Function Call
jsonopt.m
savejson (Line 146)
jsonopt
Function Call
jsonopt.m
savejson (Line 147)
jsonopt
Function Call
jsonopt.m
savejson (Line 148)
jsonopt
Function Call
jsonopt.m
savejson (Line 149)
jsonopt
Function Call
jsonopt.m
savejson (Line 150)
jsonopt
Function Call
jsonopt.m
savejson (Line 151)
jsonopt
Function Call
jsonopt.m
savejson (Line 152)
jsonopt
Function Call
jsonopt.m
savejson (Line 153)
jsonopt
Function Call
jsonopt.m
savejson (Line 154)
jsonopt
Function Call
jsonopt.m
savejson (Line 155)
jsonopt
Function Call
jsonopt.m
savejson (Line 156)
jsonopt
Function Call
jsonopt.m
savejson (Line 157)
jsonopt
Function Call
jsonopt.m
savejson (Line 161)
jsonopt
Function Call
jsonopt.m
savejson (Line 187)
jsonopt
Function Call
jsonopt.m
savejson (Line 222)
jsonopt
Function Call
jsonopt.m
savejson (Line 228)
jsonopt
Function Call
jsonopt.m
savejson (Line 230)
jsonopt
Function Call
jsonopt.m
savejson (Line 231)
jsonopt
Function Call
jsonopt.m
savejson (Line 233)
jsonopt
Function Call
jsonopt.m
savejson (Line 236)
jsonopt
Function Call
varargin2struct.m
savejson (Line 137)
varargin2struct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
savejson
Toolbox

savemsgpack.m

Path
D:\MAGE\dependencies\JSONLab\savemsgpack.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1019

Required Files

FileImpactedRequiredDependency Type
savebj.m
savemsgpack (Line 26)
savebj
Function Call
savebj.m
savemsgpack (Line 28)
savebj
Function Call
savebj.m
savemsgpack (Line 30)
savebj
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
savemsgpack
Toolbox

savemsgpack.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\savemsgpack.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1019

Impacted Files

FileImpactedRequiredDependency Type
jsave.m
jsave (Line 98)
savemsgpack
Function Call

Required Files

FileImpactedRequiredDependency Type
savebj.m
savemsgpack (Line 26)
savebj
Function Call
savebj.m
savemsgpack (Line 28)
savebj
Function Call
savebj.m
savemsgpack (Line 30)
savebj
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
savemsgpack
Toolbox

saveubjson.m

Path
D:\MAGE\dependencies\JSONLab\saveubjson.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)3105

Required Files

FileImpactedRequiredDependency Type
savebj.m
saveubjson (Line 66)
savebj
Function Call
savebj.m
saveubjson (Line 68)
savebj
Function Call
savebj.m
saveubjson (Line 70)
savebj
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
saveubjson
Toolbox

SBayesRC.m

Path
D:\MAGE\dependencies\GCTB\SBayesRC.m
TypeFunction
Last modified12-Aug-2024 10:25:55
Size (bytes)6265

Required Files

FileImpactedRequiredDependency Type
SBayesRC.m
SBayesRC (Line 12)
SBayesRC
Function Argument
SBayesRC.m
SBayesRC (Line 7)
SBayesRC
Function Argument
SBayesRC.m
SBayesRC (Line 8)
SBayesRC
Function Argument
dos2unix.m
SBayesRC (Line 140)
dos2unix
Function Call
dos2unix.m
SBayesRC (Line 80)
dos2unix
Function Call
dos2unix.m
SBayesRC (Line 85)
dos2unix
Function Call
getRandomName.m
SBayesRC (Line 42)
getRandomName
Function Call
getfilenames.m
SBayesRC (Line 135)
getfilenames
Function Call
makeWSLpath.m
SBayesRC (Line 112)
makeWSLpath
Function Call
makeWSLpath.m
SBayesRC (Line 125)
makeWSLpath
Function Call
makeWSLpath.m
SBayesRC (Line 147)
makeWSLpath
Function Call
makeWSLpath.m
SBayesRC (Line 149)
makeWSLpath
Function Call
makeWSLpath.m
SBayesRC (Line 97)
makeWSLpath
Function Call
makeWSLpath.m
SBayesRC (Line 98)
makeWSLpath
Function Call
makeWSLpath.m
SBayesRC (Line 99)
makeWSLpath
Function Call
mergeFiles.m
SBayesRC (Line 139)
mergeFiles
Function Call
readGWASfile.m
SBayesRC (Line 44)
readGWASfile
Function Call
runbash.m
SBayesRC (Line 128)
runbash
Function Call
runbash.m
SBayesRC (Line 150)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
SBayesRC
Toolbox
Parallel Computing Toolbox
SBayesRC (Line 18)
Function Call
Parallel Computing Toolbox
SBayesRC (Line 24)
Function Call
Parallel Computing Toolbox
SBayesRC (Line 26)
Function Call
Parallel Computing Toolbox
SBayesRC (Line 78)
Toolbox

SBayesRC.m

Path
D:\MATLAB.dependencies\MAGE\GCTB\SBayesRC.m
TypeFunction
Last modified12-Aug-2024 10:25:55
Size (bytes)6265

Impacted Files

FileImpactedRequiredDependency Type
SBayesRC.m
SBayesRC (Line 12)
SBayesRC
Function Argument
SBayesRC.m
SBayesRC (Line 7)
SBayesRC
Function Argument
SBayesRC.m
SBayesRC (Line 8)
SBayesRC
Function Argument
SBayesRC.m
SBayesRC (Line 12)
SBayesRC
Function Argument
SBayesRC.m
SBayesRC (Line 7)
SBayesRC
Function Argument
SBayesRC.m
SBayesRC (Line 8)
SBayesRC
Function Argument

Required Files

FileImpactedRequiredDependency Type
SBayesRC.m
SBayesRC (Line 12)
SBayesRC
Function Argument
SBayesRC.m
SBayesRC (Line 7)
SBayesRC
Function Argument
SBayesRC.m
SBayesRC (Line 8)
SBayesRC
Function Argument
dos2unix.m
SBayesRC (Line 140)
dos2unix
Function Call
dos2unix.m
SBayesRC (Line 80)
dos2unix
Function Call
dos2unix.m
SBayesRC (Line 85)
dos2unix
Function Call
getRandomName.m
SBayesRC (Line 42)
getRandomName
Function Call
getfilenames.m
SBayesRC (Line 135)
getfilenames
Function Call
makeWSLpath.m
SBayesRC (Line 112)
makeWSLpath
Function Call
makeWSLpath.m
SBayesRC (Line 125)
makeWSLpath
Function Call
makeWSLpath.m
SBayesRC (Line 147)
makeWSLpath
Function Call
makeWSLpath.m
SBayesRC (Line 149)
makeWSLpath
Function Call
makeWSLpath.m
SBayesRC (Line 97)
makeWSLpath
Function Call
makeWSLpath.m
SBayesRC (Line 98)
makeWSLpath
Function Call
makeWSLpath.m
SBayesRC (Line 99)
makeWSLpath
Function Call
mergeFiles.m
SBayesRC (Line 139)
mergeFiles
Function Call
readGWASfile.m
SBayesRC (Line 44)
readGWASfile
Function Call
runbash.m
SBayesRC (Line 128)
runbash
Function Call
runbash.m
SBayesRC (Line 150)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
SBayesRC
Toolbox
Parallel Computing Toolbox
SBayesRC (Line 18)
Function Call
Parallel Computing Toolbox
SBayesRC (Line 24)
Function Call
Parallel Computing Toolbox
SBayesRC (Line 26)
Function Call
Parallel Computing Toolbox
SBayesRC (Line 78)
Toolbox

scdown.cgi?fmt=txt&id=1

Problems

Impacted Files

FileImpactedRequiredDependency Type
getUKBdictionary.m
getUKBdictionary (Line 117)
scdown
Function Argument
getUKBdictionary.m
getUKBdictionary (Line 117)
scdown
Function Argument

Sex.mat

Path
D:\MATLAB.dependencies\MAGE\UKBB.Toolbox\UKB_PHENO\Sex.mat
TypeMAT-file
Last modified02-Apr-2021 10:22:23
Size (bytes)1198747

Impacted Files

FileImpactedRequiredDependency Type
getUKB_alcohol.m
getUKB_alcohol (Line 46)
Sex
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
Sex
Toolbox

shade.m

Path
D:\MAGE\source\shade.m
TypeFunction
Last modified27-Mar-2025 10:25:08
Size (bytes)3104

Required Products

ProductImpactedDependency Type
MATLAB
shade
Toolbox

shade.m

Path
D:\MATLAB.dependencies\MAGE\shade.m
TypeFunction
Last modified27-Mar-2025 10:25:08
Size (bytes)3104

Impacted Files

FileImpactedRequiredDependency Type
GeneTestPlotter.m
drawPerPheno (Line 300)
shade
Function Call
effDotPlotter.m
effDotPlotter (Line 410)
shade
Function Call
effPlotter.m
effPlotter (Line 920)
shade
Function Call
effPlotter.m
effPlotter (Line 953)
shade
Function Call
rarePlotter.m
rarePlotter (Line 569)
shade
Function Call
rarePlotter.m
rarePlotter (Line 569)
shade
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
shade
Toolbox

smartFloat.m

Path
D:\MAGE\source\smartFloat.m
TypeFunction
Last modified21-May-2025 14:48:32
Size (bytes)1271

Required Products

ProductImpactedDependency Type
MATLAB
smartFloat
Toolbox

snptag.m

Path
D:\MAGE\dependencies\GCTA\snptag.m
TypeFunction
Last modified08-Aug-2024 11:18:10
Size (bytes)12039

Required Products

ProductImpactedDependency Type
MATLAB
snptag
Toolbox

snptag.m

Path
D:\MATLAB.dependencies\MAGE\GCTA\snptag.m
TypeFunction
Last modified08-Aug-2024 11:18:10
Size (bytes)12039

Impacted Files

FileImpactedRequiredDependency Type
gcta.m
gcta (Line 105)
snptag
Function Call
gcta.m
gcta (Line 105)
snptag
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
snptag
Toolbox

ss2fuma.m

Path
D:\MAGE\source\ss2fuma.m
TypeFunction
Last modified21-Mar-2023 18:59:08
Size (bytes)2486

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
ss2fuma (Line 44)
bfilereader
Function Call
colnames.m
ss2fuma (Line 36)
colnames
Function Call
createGWASheader.m
ss2fuma (Line 65)
createGWASheader
Function Call
getRandomName.m
ss2fuma (Line 15)
getRandomName
Function Call
makeWSLpath.m
ss2fuma (Line 51)
makeWSLpath
Function Call
makeWSLpath.m
ss2fuma (Line 69)
makeWSLpath
Function Call
makeWSLpath.m
ss2fuma (Line 72)
makeWSLpath
Function Call
makeWSLpath.m
ss2fuma (Line 73)
makeWSLpath
Function Call
runbash.m
ss2fuma (Line 50)
runbash
Function Call
runbash.m
ss2fuma (Line 75)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
ss2fuma
Toolbox

ss2fuma.m

Path
D:\MATLAB.dependencies\MAGE\ss2fuma.m
TypeFunction
Last modified21-Mar-2023 18:59:08
Size (bytes)2486

Impacted Files

FileImpactedRequiredDependency Type
polyfun.m
prunesumstat (Line 731)
ss2fuma
Function Call
polyfun.m
prunesumstat (Line 731)
ss2fuma
Function Call

Required Files

FileImpactedRequiredDependency Type
bfilereader.m
ss2fuma (Line 44)
bfilereader
Function Call
colnames.m
ss2fuma (Line 36)
colnames
Function Call
createGWASheader.m
ss2fuma (Line 65)
createGWASheader
Function Call
getRandomName.m
ss2fuma (Line 15)
getRandomName
Function Call
makeWSLpath.m
ss2fuma (Line 51)
makeWSLpath
Function Call
makeWSLpath.m
ss2fuma (Line 69)
makeWSLpath
Function Call
makeWSLpath.m
ss2fuma (Line 72)
makeWSLpath
Function Call
makeWSLpath.m
ss2fuma (Line 73)
makeWSLpath
Function Call
runbash.m
ss2fuma (Line 50)
runbash
Function Call
runbash.m
ss2fuma (Line 75)
runbash
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
ss2fuma
Toolbox

stratify.m

Path
D:\MAGE\source\stratify.m
TypeFunction
Last modified09-Oct-2024 11:51:55
Size (bytes)956

Required Products

ProductImpactedDependency Type
MATLAB
stratify
Toolbox

strshare.m

Path
D:\MAGE\source\strshare.m
TypeFunction
Last modified18-Oct-2024 20:47:25
Size (bytes)2590

Required Products

ProductImpactedDependency Type
MATLAB
strshare
Toolbox

strshare.m

Path
D:\MATLAB.dependencies\MAGE\strshare.m
TypeFunction
Last modified18-Oct-2024 20:47:25
Size (bytes)2590

Impacted Files

FileImpactedRequiredDependency Type
callVEP.m
getdbNSFP (Line 724)
strshare
Function Call
callVEP.m
getdbNSFP (Line 724)
strshare
Function Call
call_regenie.m
subsetGenoFiles (Line 701)
strshare
Function Call
call_regenie.m
subsetGenoFiles (Line 716)
strshare
Function Call
call_regenie.m
subsetGenoFiles (Line 720)
strshare
Function Call
call_regenie.m
subsetGenoFiles (Line 709)
strshare
Function Call
call_regenie.m
subsetGenoFiles (Line 724)
strshare
Function Call
call_regenie.m
subsetGenoFiles (Line 728)
strshare
Function Call
gcta.m
gcta (Line 65)
strshare
Function Call
gcta.m
gcta (Line 65)
strshare
Function Call
getWES.m
getWESsingle (Line 569)
strshare
Function Call
getWES.m
getWESsingle (Line 573)
strshare
Function Call
getWES.m
readAnnoSetFiles (Line 946)
strshare
Function Call
getWES.m
readAnnoSetFiles (Line 948)
strshare
Function Call
getWES.m
getWESsingle (Line 610)
strshare
Function Call
getWES.m
getWESsingle (Line 614)
strshare
Function Call
getWES.m
readAnnoSetFiles (Line 987)
strshare
Function Call
getWES.m
readAnnoSetFiles (Line 989)
strshare
Function Call
getbulkgeno.m
getbulkgeno (Line 115)
strshare
Function Call
getbulkgeno.m
getbulkgeno (Line 117)
strshare
Function Call
getbulkgeno.m
getbulkgeno (Line 115)
strshare
Function Call
getbulkgeno.m
getbulkgeno (Line 117)
strshare
Function Call
gwasCaller.m
gene_based_tests (Line 596)
strshare
Function Call
gwasCaller.m
gene_based_tests (Line 597)
strshare
Function Call
gwasCaller.m
gene_based_tests (Line 598)
strshare
Function Call
ldclump.m
ldclump (Line 111)
strshare
Function Call
ldclump.m
ldclump (Line 111)
strshare
Function Call
polyfun.m
polyfun (Line 101)
strshare
Function Call
polyfun.m
polyfun (Line 71)
strshare
Function Call
polyfun.m
polyfun (Line 99)
strshare
Function Call
polyfun.m
polyfun (Line 101)
strshare
Function Call
polyfun.m
polyfun (Line 71)
strshare
Function Call
polyfun.m
polyfun (Line 99)
strshare
Function Call
readvcf.m
readvcf (Line 29)
strshare
Function Call
ribocure.m
gene_based_tests (Line 612)
strshare
Function Call
ribocure.m
gene_based_tests (Line 613)
strshare
Function Call
ribocure.m
gene_based_tests (Line 614)
strshare
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
strshare
Toolbox

struct2array.m

Path
D:\MAGE\source\struct2array.m
TypeFunction
Last modified09-Jul-2024 17:25:20
Size (bytes)195

Required Products

ProductImpactedDependency Type
MATLAB
struct2array
Toolbox

struct2array.m

Path
D:\MATLAB.dependencies\MAGE\struct2array.m
TypeFunction
Last modified09-Jul-2024 17:25:20
Size (bytes)195

Impacted Files

FileImpactedRequiredDependency Type
effPlotter.m
effPlotter (Line 350)
struct2array
Function Call
gwasrunner.m
pruneGeneBasedResults (Line 4408)
struct2array
Function Call
gwasrunner.m
pruneGeneBasedResults (Line 4408)
struct2array
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 2074)
struct2array
Function Call
phenoParser.m
loadDFfromUKBBasket (Line 2074)
struct2array
Function Call
pruneGeneBasedResults.m
pruneGeneBasedResults (Line 145)
struct2array
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
struct2array
Toolbox

struct2rfun.m

Path
D:\MAGE\dependencies\Rutils\struct2rfun.m
TypeFunction
Last modified08-Jan-2025 14:58:04
Size (bytes)3075

Required Files

FileImpactedRequiredDependency Type
table2Rdf.m
struct2rfun (Line 25)
table2Rdf
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
struct2rfun
Toolbox

struct2rfun.m

Path
D:\MATLAB.dependencies\MAGE\Rutils\struct2rfun.m
TypeFunction
Last modified08-Jan-2025 14:58:04
Size (bytes)3075

Impacted Files

FileImpactedRequiredDependency Type
EnhancedVolcano.m
EnhancedVolcano (Line 83)
struct2rfun
Function Call
MRlap.m
MRlap (Line 175)
struct2rfun
Function Call
Rpam.m
Rpam (Line 126)
struct2rfun
Function Call
ggvenn.m
ggvenn (Line 51)
struct2rfun
Function Call
interactionHelper.m
interactionHelper (Line 58)
struct2rfun
Function Call
mediate.m
mediate (Line 223)
struct2rfun
Function Call
pheatmap.m
pheatmap (Line 155)
struct2rfun
Function Call
pheatmap.m
pheatmap (Line 155)
struct2rfun
Function Call
upsetWrapper.m
upsetWrapper (Line 86)
struct2rfun
Function Call
upsetWrapper.m
upsetWrapper (Line 88)
struct2rfun
Function Call
upsetWrapper.m
upsetWrapper (Line 92)
struct2rfun
Function Call

Required Files

FileImpactedRequiredDependency Type
table2Rdf.m
struct2rfun (Line 25)
table2Rdf
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
struct2rfun
Toolbox

susie.beta.txt

Problems

Impacted Files

FileImpactedRequiredDependency Type
susie.m
susie (Line 71)
susie.beta
Function Argument

susie.m

Path
D:\MAGE\dependencies\Rwrappers\susie.m
TypeFunction
Last modified16-Apr-2023 12:07:39
Size (bytes)2969

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
susie (Line 69)
MATLAB2Rconnector
Function Call
susie.beta.txt
susie (Line 71)
susie.beta
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
susie
Toolbox

tabix.m

Path
D:\MAGE\source\tabix.m
TypeFunction
Last modified31-May-2025 15:41:12
Size (bytes)5562

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
tabix (Line 91)
MATLAB2Rconnector
Function Call
bfilereader.m
tabix (Line 142)
bfilereader
Function Call
bfilereader.m
tabix (Line 73)
bfilereader
Function Call
getRandomName.m
tabix (Line 38)
getRandomName
Function Call
makeWSLpath.m
tabix (Line 74)
makeWSLpath
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
tabix
Toolbox
Parallel Computing Toolbox
tabix (Line 134)
Function Call

tabix.m

Path
D:\MATLAB.dependencies\MAGE\tabix.m
TypeFunction
Last modified30-Apr-2024 11:59:55
Size (bytes)5806

Impacted Files

FileImpactedRequiredDependency Type
coloc.m
fetcheqtlCatalogue (Line 507)
tabix
Function Call
coloc.m
fetcheqtlCatalogue (Line 510)
tabix
Function Call
coloc.m
fetcheqtlCatalogue (Line 513)
tabix
Function Call

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
tabix (Line 103)
MATLAB2Rconnector
Function Call
bfilereader.m
tabix (Line 154)
bfilereader
Function Call
bfilereader.m
tabix (Line 85)
bfilereader
Function Call
getRandomName.m
tabix (Line 38)
getRandomName
Function Call
makeWSLpath.m
tabix (Line 86)
makeWSLpath
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
tabix
Toolbox
Parallel Computing Toolbox
tabix (Line 146)
Function Call

table2pandasDF.m

Path
D:\MAGE\dependencies\pyutils\table2pandasDF.m
TypeFunction
Last modified22-Aug-2023 12:11:46
Size (bytes)1179

Required Files

FileImpactedRequiredDependency Type
colnames.m
table2pandasDF (Line 10)
colnames
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
table2pandasDF
Toolbox

table2pandasDF.m

Path
D:\MATLAB.dependencies\MAGE\pyutils\table2pandasDF.m
TypeFunction
Last modified22-Aug-2023 12:11:46
Size (bytes)1179

Impacted Files

FileImpactedRequiredDependency Type
violinPlot.m
violinPlot (Line 84)
table2pandasDF
Function Call

Required Files

FileImpactedRequiredDependency Type
colnames.m
table2pandasDF (Line 10)
colnames
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
table2pandasDF
Toolbox

table2Rdf.m

Path
D:\MAGE\dependencies\Rutils\table2Rdf.m
TypeFunction
Last modified04-Jun-2024 14:31:30
Size (bytes)5398

Required Files

FileImpactedRequiredDependency Type
colnames.m
table2Rdf (Line 19)
colnames
Function Call
createRvec.m
table2Rdf (Line 101)
createRvec
Function Call
createRvec.m
table2Rdf (Line 104)
createRvec
Function Call
createRvec.m
table2Rdf (Line 115)
createRvec
Function Call
createRvec.m
table2Rdf (Line 130)
createRvec
Function Call
createRvec.m
table2Rdf (Line 151)
createRvec
Function Call
fastWriteTable.m
table2Rdf (Line 44)
fastWriteTable
Function Call
getRandomName.m
table2Rdf (Line 34)
getRandomName
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
table2Rdf
Toolbox
Parallel Computing Toolbox
table2Rdf (Line 41)
Function Call

table2Rdf.m

Path
D:\MATLAB.dependencies\MAGE\Rutils\table2Rdf.m
TypeFunction
Last modified04-Jun-2024 14:31:30
Size (bytes)5398

Impacted Files

FileImpactedRequiredDependency Type
fitSurvCox.m
fitSurvCox (Line 369)
table2Rdf
Function Call
fitSurvCox.m
fitSurvCox (Line 369)
table2Rdf
Function Call
interactionHelper.m
interactionHelper (Line 47)
table2Rdf
Function Call
struct2rfun.m
struct2rfun (Line 25)
table2Rdf
Function Call
struct2rfun.m
struct2rfun (Line 25)
table2Rdf
Function Call

Required Files

FileImpactedRequiredDependency Type
colnames.m
table2Rdf (Line 19)
colnames
Function Call
createRvec.m
table2Rdf (Line 101)
createRvec
Function Call
createRvec.m
table2Rdf (Line 104)
createRvec
Function Call
createRvec.m
table2Rdf (Line 115)
createRvec
Function Call
createRvec.m
table2Rdf (Line 130)
createRvec
Function Call
createRvec.m
table2Rdf (Line 151)
createRvec
Function Call
fastWriteTable.m
table2Rdf (Line 44)
fastWriteTable
Function Call
getRandomName.m
table2Rdf (Line 34)
getRandomName
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
table2Rdf
Toolbox
Parallel Computing Toolbox
table2Rdf (Line 41)
Function Call

terminate

Problems

Impacted Files

FileImpactedRequiredDependency Type
coloc.m
getLDmat (Line 928)
terminate
Function Call
coloc.m
getLDmat (Line 979)
terminate
Function Call
polyfun.m
fetchLDmat (Line 496)
terminate
Function Call
polyfun.m
fetchLDmat (Line 496)
terminate
Function Call

testME.m

Path
D:\MAGE\dependencies\bFileReader\testME.m
TypeFunction
Last modified03-Apr-2025 14:53:30
Size (bytes)2205

Required Products

ProductImpactedDependency Type
MATLAB
testME
Toolbox

testPhenoparser.m

Path
D:\MAGE\source\testPhenoparser.m
TypeFunction
Last modified25-Sep-2024 10:27:43
Size (bytes)3683

Required Files

FileImpactedRequiredDependency Type
gwasrunner.m
testPhenoparser (Line 96)
gwasrunner
Function Call
phenoParser.m
testPhenoparser (Line 39)
phenoParser
Function Call
phenoParser.m
testPhenoparser (Line 47)
phenoParser
Function Call
phenoParser.m
testPhenoparser (Line 54)
phenoParser
Function Call
phenoParser.m
testPhenoparser (Line 60)
phenoParser
Function Call
phenoParser.m
testPhenoparser (Line 66)
phenoParser
Function Call
phenoParser.m
testPhenoparser (Line 71)
phenoParser
Function Call
phenoParser.m
testPhenoparser (Line 76)
phenoParser
Function Call
phenoParser.m
testPhenoparser (Line 85)
phenoParser
Function Call
phenoParser.m
testPhenoparser (Line 90)
phenoParser
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
testPhenoparser
Toolbox

textRepel.m

Path
D:\MAGE\dependencies\Rwrappers\textRepel.m
TypeFunction
Last modified10-Sep-2024 16:18:44
Size (bytes)4969

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
textRepel (Line 89)
MATLAB2Rconnector
Function Call
getRandomName.m
textRepel (Line 26)
getRandomName
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
textRepel
Toolbox

textRepel.m

Path
D:\MATLAB.dependencies\MAGE\Rwrappers\textRepel.m
TypeFunction
Last modified10-Sep-2024 16:18:44
Size (bytes)4969

Impacted Files

FileImpactedRequiredDependency Type
qq.m
addLabel2 (Line 230)
textRepel
Function Call

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
textRepel (Line 89)
MATLAB2Rconnector
Function Call
getRandomName.m
textRepel (Line 26)
getRandomName
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
textRepel
Toolbox

thisgene

Problems

Impacted Files

FileImpactedRequiredDependency Type
gwasCaller.m
gwasCaller (Line 249)
thisgene
Function Call

tmp2

Problems

Impacted Files

FileImpactedRequiredDependency Type
GeneTestPlotter.m
applyMultiTest (Line 417)
tmp2
Function Call

trainCVmodels.m

Path
D:\MAGE\dependencies\DL\trainCVmodels.m
TypeFunction
Last modified04-Oct-2024 16:03:26
Size (bytes)53582

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
trainInnerCV (Line 778)
MATLAB2Rconnector
Function Call
colnames.m
plotSHAP (Line 575)
colnames
Function Call
colnames.m
plotSHAP (Line 620)
colnames
Function Call
colnames.m
plotSHAP (Line 621)
colnames
Function Call
get_colormap.m
plotSHAP (Line 541)
get_colormap
Function Call
kfoldLoss
trainModel (Line 1168)
kfoldLoss
Function Call
kfoldLoss
trainModel (Line 1170)
kfoldLoss
Function Call
kfoldPredict
trainModel (Line 1172)
kfoldPredict
Function Call
progressGen.m
trainModel (Line 929)
progressGen
Function Call
progressGen.m
trainModel (Line 931)
progressGen
Function Call
removeCovarEffect.m
trainCVmodels (Line 254)
removeCovarEffect
Function Call
removeCovarEffect.m
trainCVmodels (Line 255)
removeCovarEffect
Function Call
removeCovarEffect.m
trainCVmodels (Line 256)
removeCovarEffect
Function Call

Required Products

ProductImpactedDependency Type
Curve Fitting Toolbox
trainModel (Line 1149)
Function Call
MATLAB
trainCVmodels
Toolbox
Statistics and Machine Learning Toolbox
trainModel (Line 1010)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1025)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1029)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1031)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1038)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1045)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1046)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1053)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1054)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1082)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1105)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1112)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1113)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1117)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1128)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1146)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1148)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1166)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1183)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1206)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1216)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1226)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 1235)
Function Call
Statistics and Machine Learning Toolbox
trainCVmodels (Line 209)
Function Call
Statistics and Machine Learning Toolbox
trainCVmodels (Line 212)
Function Call
Statistics and Machine Learning Toolbox
trainCVmodels (Line 295)
Function Call
Statistics and Machine Learning Toolbox
trainCVmodels (Line 350)
Function Call
Statistics and Machine Learning Toolbox
trainCVmodels (Line 353)
Function Call
Statistics and Machine Learning Toolbox
trainCVmodels (Line 425)
Function Call
Statistics and Machine Learning Toolbox
trainCVmodels (Line 429)
Function Call
Statistics and Machine Learning Toolbox
plotICE (Line 495)
Function Call
Statistics and Machine Learning Toolbox
trainInnerCV (Line 692)
Function Call
Statistics and Machine Learning Toolbox
trainInnerCV (Line 695)
Function Call
Statistics and Machine Learning Toolbox
trainInnerCV (Line 703)
Function Call
Statistics and Machine Learning Toolbox
trainInnerCV (Line 718)
Function Call
Statistics and Machine Learning Toolbox
trainInnerCV (Line 737)
Function Call
Statistics and Machine Learning Toolbox
trainInnerCV (Line 748)
Function Call
Statistics and Machine Learning Toolbox
trainInnerCV (Line 800)
Function Call
Statistics and Machine Learning Toolbox
evaluatePredictions (Line 857)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 916)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 935)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 938)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 971)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 987)
Function Call
Statistics and Machine Learning Toolbox
trainModel (Line 995)
Function Call
System Identification Toolbox
trainModel (Line 1156)
Function Call

truncateStr.m

Path
D:\MAGE\source\truncateStr.m
TypeFunction
Last modified31-May-2025 15:41:29
Size (bytes)800

Required Products

ProductImpactedDependency Type
MATLAB
truncateStr
Toolbox

truncateStr.m

Path
D:\MATLAB.dependencies\MAGE\truncateStr.m
TypeFunction
Last modified07-Sep-2023 15:04:00
Size (bytes)802

Impacted Files

FileImpactedRequiredDependency Type
GSEApy.m
writeGSEAtable (Line 232)
truncateStr
Function Call
GSEApy.m
writeGSEAtable (Line 232)
truncateStr
Function Call
gwasrunner.m
pruneMore (Line 3612)
truncateStr
Function Call
gwasrunner.m
pruneMore (Line 3668)
truncateStr
Function Call
gwasrunner.m
pruneMore (Line 3612)
truncateStr
Function Call
gwasrunner.m
pruneMore (Line 3668)
truncateStr
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
truncateStr
Toolbox

ukb22828_cX_b0_v3.mfi.maf005.info7.mat

Path
D:\Imputed\sex.chrom\ukb22828_cX_b0_v3.mfi.maf005.info7.mat
TypeMAT-file
Last modified03-Sep-2022 11:21:11
Size (bytes)11578877

Impacted Files

FileImpactedRequiredDependency Type
ribocure.m
ribocure (Line 260)
ukb22828_cX_b0_v3.mfi.maf005.info7
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
ukb22828_cX_b0_v3.mfi.maf005.info7
Toolbox

UKB2MATfile

Problems

Impacted Files

FileImpactedRequiredDependency Type
getUKBtrait.m
getUKBtrait (Line 51)
UKB2MATfile
Function Call

UKBafb.m

Path
D:\MAGE\source\UKBafb.m
TypeFunction
Last modified06-Nov-2024 11:11:16
Size (bytes)1394

Required Files

FileImpactedRequiredDependency Type
colnames.m
UKBafb (Line 40)
colnames
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
UKBafb
Toolbox

UKBBasketParser.m

Path
D:\MAGE\UKBB.Toolbox\UKBBasketParser.m
TypeFunction
Last modified25-Sep-2024 16:28:19
Size (bytes)7840

Required Files

FileImpactedRequiredDependency Type
colnames.m
UKBBasketParser (Line 167)
colnames
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
UKBBasketParser
Toolbox
Parallel Computing Toolbox
UKBBasketParser (Line 185)
Function Call
Parallel Computing Toolbox
UKBBasketParser (Line 190)
Toolbox
Parallel Computing Toolbox
UKBBasketParser (Line 36)
Function Call
Parallel Computing Toolbox
UKBBasketParser (Line 38)
Function Call

UKBBasketParser.m

Path
D:\MATLAB.dependencies\MAGE\UKBB.Toolbox\UKBBasketParser.m
TypeFunction
Last modified25-Sep-2024 16:28:19
Size (bytes)7840

Impacted Files

FileImpactedRequiredDependency Type
dx_extract_dataset.m
dx_extract_dataset (Line 457)
UKBBasketParser
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 474)
UKBBasketParser
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 457)
UKBBasketParser
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 474)
UKBBasketParser
Function Call

Required Files

FileImpactedRequiredDependency Type
colnames.m
UKBBasketParser (Line 167)
colnames
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
UKBBasketParser
Toolbox
Parallel Computing Toolbox
UKBBasketParser (Line 185)
Function Call
Parallel Computing Toolbox
UKBBasketParser (Line 190)
Toolbox
Parallel Computing Toolbox
UKBBasketParser (Line 36)
Function Call
Parallel Computing Toolbox
UKBBasketParser (Line 38)
Function Call

UKBtraitParser.m

Path
D:\MATLAB.dependencies\MAGE\UKBB.Toolbox\UKBtraitParser.m
TypeFunction
Last modified05-Apr-2022 12:18:31
Size (bytes)22854

Impacted Files

FileImpactedRequiredDependency Type
UKBtraitParser.m
UKBtraitParser (Line 22)
UKBtraitParser
Function Argument
UKBtraitParser.m
UKBtraitParser (Line 83)
UKBtraitParser
Function Argument
getUKBtrait.m
getUKBtrait (Line 27)
UKBtraitParser
Function Call

Required Files

FileImpactedRequiredDependency Type
UKB_eid_ukb29150.mat
UKBtraitParser (Line 172)
UKB_eid_ukb29150
Function Argument
UKB_mergeInstance_parser.m
inTraitParser (Line 372)
UKB_mergeInstance_parser
Function Call
UKBtraitParser.m
UKBtraitParser (Line 22)
UKBtraitParser
Function Argument
UKBtraitParser.m
UKBtraitParser (Line 83)
UKBtraitParser
Function Argument
mergeMultipleKeyterms.m
handleSecondaryTerm (Line 411)
mergeMultipleKeyterms
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
UKBtraitParser
Toolbox

UKB_eid_ukb29150.mat

Path
D:\MATLAB.dependencies\MAGE\UKBB.Toolbox\UKB_eid_ukb29150.mat
TypeMAT-file
Last modified02-Jul-2019 15:41:26
Size (bytes)1815802

Impacted Files

FileImpactedRequiredDependency Type
UKBtraitParser.m
UKBtraitParser (Line 172)
UKB_eid_ukb29150
Function Argument

Required Products

ProductImpactedDependency Type
MATLAB
UKB_eid_ukb29150
Toolbox

UKB_HESIN_DEATH_2mat.m

Path
D:\MAGE\UKBB.Toolbox\UKBFileParser_HESIN_DEATH\UKB_HESIN_DEATH_2mat.m
TypeFunction
Last modified16-Nov-2024 18:08:44
Size (bytes)11551

Required Files

FileImpactedRequiredDependency Type
UKB_HESIN_DEATH_2mat.m
UKB_HESIN_DEATH_2mat (Line 30)
UKB_HESIN_DEATH_2mat
Function Argument
phenoParser.m
UKB_HESIN_DEATH_2mat (Line 55)
phenoParser
Function Call
phenoParser.m
UKB_HESIN_DEATH_2mat (Line 59)
phenoParser
Function Call
phenoParser.m
UKB_HESIN_DEATH_2mat (Line 60)
phenoParser
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
UKB_HESIN_DEATH_2mat
Toolbox
Parallel Computing Toolbox
UKB_HESIN_DEATH_2mat (Line 43)
Function Call
Parallel Computing Toolbox
UKB_HESIN_DEATH_2mat (Line 44)
Function Call

UKB_HESIN_DEATH_2mat.m

Path
D:\MATLAB.dependencies\MAGE\UKBB.Toolbox\UKBFileParser_HESIN_DEATH\UKB_HESIN_DEATH_2mat.m
TypeFunction
Last modified16-Nov-2024 18:08:44
Size (bytes)11551

Impacted Files

FileImpactedRequiredDependency Type
UKB_HESIN_DEATH_2mat.m
UKB_HESIN_DEATH_2mat (Line 30)
UKB_HESIN_DEATH_2mat
Function Argument
UKB_HESIN_DEATH_2mat.m
UKB_HESIN_DEATH_2mat (Line 30)
UKB_HESIN_DEATH_2mat
Function Argument
dx_extract_dataset.m
dx_extract_dataset (Line 120)
UKB_HESIN_DEATH_2mat
Function Argument
dx_extract_dataset.m
dx_extract_dataset (Line 488)
UKB_HESIN_DEATH_2mat
Function Call
dx_extract_dataset.m
dx_extract_dataset (Line 120)
UKB_HESIN_DEATH_2mat
Function Argument
dx_extract_dataset.m
dx_extract_dataset (Line 488)
UKB_HESIN_DEATH_2mat
Function Call

Required Files

FileImpactedRequiredDependency Type
UKB_HESIN_DEATH_2mat.m
UKB_HESIN_DEATH_2mat (Line 30)
UKB_HESIN_DEATH_2mat
Function Argument
phenoParser.m
UKB_HESIN_DEATH_2mat (Line 55)
phenoParser
Function Call
phenoParser.m
UKB_HESIN_DEATH_2mat (Line 59)
phenoParser
Function Call
phenoParser.m
UKB_HESIN_DEATH_2mat (Line 60)
phenoParser
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
UKB_HESIN_DEATH_2mat
Toolbox
Parallel Computing Toolbox
UKB_HESIN_DEATH_2mat (Line 43)
Function Call
Parallel Computing Toolbox
UKB_HESIN_DEATH_2mat (Line 44)
Function Call

UKB_mergeInstance_parser.m

Path
D:\MATLAB.dependencies\MAGE\UKBB.Toolbox\UKB_mergeInstance_parser.m
TypeFunction
Last modified08-Apr-2021 15:39:21
Size (bytes)2871

Impacted Files

FileImpactedRequiredDependency Type
UKBtraitParser.m
inTraitParser (Line 372)
UKB_mergeInstance_parser
Function Call
mergeMultipleKeyterms.m
mergeMultipleKeyterms (Line 24)
UKB_mergeInstance_parser
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
UKB_mergeInstance_parser
Toolbox

upsetWrapper.m

Path
D:\MAGE\dependencies\Rwrappers\upsetWrapper.m
TypeFunction
Last modified26-Jun-2024 11:51:22
Size (bytes)4710

Required Files

FileImpactedRequiredDependency Type
MATLAB2Rconnector.m
upsetWrapper (Line 97)
MATLAB2Rconnector
Function Call
getRandomName.m
upsetWrapper (Line 65)
getRandomName
Function Call
struct2rfun.m
upsetWrapper (Line 86)
struct2rfun
Function Call
struct2rfun.m
upsetWrapper (Line 88)
struct2rfun
Function Call
struct2rfun.m
upsetWrapper (Line 92)
struct2rfun
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
upsetWrapper
Toolbox

varargin2struct.m

Path
D:\MAGE\dependencies\JSONLab\varargin2struct.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1104

Required Files

FileImpactedRequiredDependency Type
mergestruct.m
varargin2struct (Line 31)
mergestruct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
varargin2struct
Toolbox

varargin2struct.m

Path
D:\MATLAB.dependencies\MAGE\dependencies\JSONLab\varargin2struct.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1104

Impacted Files

FileImpactedRequiredDependency Type
jdatadecode.m
jdatadecode (Line 64)
varargin2struct
Function Call
jdatadecode.m
jdatadecode (Line 64)
varargin2struct
Function Call
jdataencode.m
jdataencode (Line 81)
varargin2struct
Function Call
jdataencode.m
jdataencode (Line 81)
varargin2struct
Function Call
jload.m
jload (Line 59)
varargin2struct
Function Call
jsave.m
jsave (Line 51)
varargin2struct
Function Call
loadbj.m
loadbj (Line 78)
varargin2struct
Function Call
loadbj.m
loadbj (Line 78)
varargin2struct
Function Call
loadjson.m
loadjson (Line 81)
varargin2struct
Function Call
loadjson.m
loadjson (Line 81)
varargin2struct
Function Call
loadmsgpack.m
loadmsgpack (Line 33)
varargin2struct
Function Call
loadmsgpack.m
loadmsgpack (Line 33)
varargin2struct
Function Call
savebj.m
savebj (Line 148)
varargin2struct
Function Call
savebj.m
savebj (Line 148)
varargin2struct
Function Call
savejson.m
savejson (Line 137)
varargin2struct
Function Call
savejson.m
savejson (Line 137)
varargin2struct
Function Call

Required Files

FileImpactedRequiredDependency Type
mergestruct.m
varargin2struct (Line 31)
mergestruct
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
varargin2struct
Toolbox

vcftrimmer.m

Path
D:\MAGE\dependencies\VEP\vcftrimmer.m
TypeFunction
Last modified10-Jun-2023 16:22:03
Size (bytes)8947

Required Files

FileImpactedRequiredDependency Type
getnext
vcftrimmerReducer (Line 255)
getnext
Function Call
hasnext
vcftrimmerReducer (Line 251)
hasnext
Function Call

Required Products

ProductImpactedDependency Type
Database Toolbox
bgi2vcf (Line 67)
Function Call
MATLAB
vcftrimmer
Toolbox
Parallel Computing Toolbox
vcftrimmer (Line 44)
Function Call
Parallel Computing Toolbox
vcftrimmer (Line 45)
Function Call
Parallel Computing Toolbox
vcftrimmer (Line 47)
Function Call

vif.m

Path
D:\MAGE\source\vif.m
TypeFunction
Last modified05-Sep-2020 18:52:16
Size (bytes)1514

Required Products

ProductImpactedDependency Type
MATLAB
vif
Toolbox
Statistics and Machine Learning Toolbox
vif (Line 23)
Function Call

vif.m

Path
D:\MATLAB.dependencies\MAGE\vif.m
TypeFunction
Last modified05-Sep-2020 18:52:16
Size (bytes)1514

Impacted Files

FileImpactedRequiredDependency Type
gwasrunner.m
runModels (Line 1978)
vif
Function Call
gwasrunner.m
runModels (Line 1978)
vif
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
vif
Toolbox
Statistics and Machine Learning Toolbox
vif (Line 23)
Function Call

violinPlot.m

Path
D:\MAGE\dependencies\pyutils\violinPlot.m
TypeFunction
Last modified11-Sep-2024 14:12:32
Size (bytes)7642

Required Files

FileImpactedRequiredDependency Type
getPycmd.m
violinPlot (Line 105)
getPycmd
Function Call
getPycmd.m
violinPlot (Line 107)
getPycmd
Function Call
getPycmd.m
violinPlot (Line 116)
getPycmd
Function Call
getPycmd.m
violinPlot (Line 132)
getPycmd
Function Call
table2pandasDF.m
violinPlot (Line 84)
table2pandasDF
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
violinPlot
Toolbox

zipmat.mexw64

Path
D:\MATLAB.dependencies\MAGE\dependencies\zmat\zipmat.mexw64
TypeMEX-file
Last modified19-Jul-2024 04:16:53
Size (bytes)530944

Impacted Files

FileImpactedRequiredDependency Type
bgenreader.m
innerzlibdecomp (Line 606)
zipmat
Function Call
bgenreader.m
innerzlibdecomp (Line 657)
zipmat
Function Call

zlibdecode.m

Path
D:\MAGE\dependencies\JSONLab\zlibdecode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)2249

Required Files

FileImpactedRequiredDependency Type
isoctavemesh.m
zlibdecode (Line 47)
isoctavemesh
Function Call
zmat
zlibdecode (Line 42)
zmat
Function Call
zmat
zlibdecode (Line 44)
zmat
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
zlibdecode
Toolbox

zlibdecode.m

Path
D:\MAGE\source\zlibdecode.m
TypeFunction
Last modified18-Apr-2020 00:45:32
Size (bytes)871

Required Products

ProductImpactedDependency Type
MATLAB
zlibdecode
Toolbox

zlibencode.m

Path
D:\MAGE\dependencies\JSONLab\zlibencode.m
TypeFunction
Last modified26-Jul-2020 23:16:13
Size (bytes)1745

Required Files

FileImpactedRequiredDependency Type
isoctavemesh.m
zlibencode (Line 41)
isoctavemesh
Function Call
zmat
zlibencode (Line 39)
zmat
Function Call

Required Products

ProductImpactedDependency Type
MATLAB
zlibencode
Toolbox

zmat

Problems

Impacted Files

FileImpactedRequiredDependency Type
base64decode.m
base64decode (Line 34)
zmat
Function Call
base64decode.m
base64decode (Line 34)
zmat
Function Call
base64encode.m
base64encode (Line 36)
zmat
Function Call
base64encode.m
base64encode (Line 36)
zmat
Function Call
gzipdecode.m
gzipdecode (Line 41)
zmat
Function Call
gzipdecode.m
gzipdecode (Line 43)
zmat
Function Call
gzipencode.m
gzipencode (Line 40)
zmat
Function Call
lz4decode.m
lz4decode (Line 37)
zmat
Function Call
lz4decode.m
lz4decode (Line 39)
zmat
Function Call
lz4encode.m
lz4encode (Line 35)
zmat
Function Call
lz4hcdecode.m
lz4hcdecode (Line 37)
zmat
Function Call
lz4hcdecode.m
lz4hcdecode (Line 39)
zmat
Function Call
lz4hcencode.m
lz4hcencode (Line 35)
zmat
Function Call
lzipdecode.m
lzipdecode (Line 37)
zmat
Function Call
lzipdecode.m
lzipdecode (Line 39)
zmat
Function Call
lzipencode.m
lzipencode (Line 35)
zmat
Function Call
lzmadecode.m
lzmadecode (Line 37)
zmat
Function Call
lzmadecode.m
lzmadecode (Line 39)
zmat
Function Call
lzmaencode.m
lzmaencode (Line 35)
zmat
Function Call
zlibdecode.m
zlibdecode (Line 42)
zmat
Function Call
zlibdecode.m
zlibdecode (Line 44)
zmat
Function Call
zlibencode.m
zlibencode (Line 39)
zmat
Function Call